Gene SeD_A1982 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1982 
Symbol 
ID6872051 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1913850 
End bp1914992 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content46% 
IMG OID642785098 
Productinner membrane transport protein YdiM 
Protein accessionYP_002215764 
Protein GI198243031 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.0000218358 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAAATC GTTATTTCCC TACCGCTGTA GGGTTGTATT TTAATTACTT TGTACATGGC 
ATGGGGGTTA TCCTGATGAG CCTGAACATG TCATCGCTTG AACAGCAATG GCATACCAGT 
GCCGCAGGCG TATCTATTGT GATCTCTTCG CTTGGTATTG GCCGGCTAAG CGTTTTGTTA 
ATCGCCGGTA TGCTTTCCGA TCGCTTTGGT CGCCGTCCTT TTATCATTCT GGGGACCGCC 
TGTTACCTGA TTTTTTTCAT TGGCATTCTT TATGCTCAGA CGATTTTTGT CGCTTATGCC 
TGTGGTTTTT TAGCGGGTAT GGCCAACAGT TTTTTAGATG CAGGTACCTA TCCCAGTTTG 
ATGGAAGCCT TCCCTCGCTC CCCCAGTACG GCAAATATTC TGATTAAAGC ATTTGTCTCT 
GGCGGGCAAT TCTTGTTGCC CATTATTATC AGTTTATTAG TCTGGGCTAA TATGTGGTTT 
GGCTGGTCCT TCCTGCTTGC CGGGGCGATC ATGCTTATTA ATGCTCTGTT TTTATTACGC 
TGTCCTTTTC CACCCTATCC TGGTCGGATA TTGAAGCCCA AAATCTCGCA AGCGCCAGTC 
ACAGGCGTAC ATCATTGCTC CCTCATCGAT CTTATCAGCT ACACCCTTTA TGGCTATATC 
TCGATGGCAA CCTTTTATCT TTTAAGTATT TATACCTGCG GATCGCTACT CTGCGTTTTT 
ATTACCGCCC CGCTGGTCAG AAAAACAATT CGCTCTACCA CATTATTGAT GTTTTATACC 
TTTATCTCTT TTATTGCGCT TCTGACGGTC TGCCTGCATC CTCAGACCTA TATTGTTATG 
ATCTTCGCAT TCGTCATTGG ATTCTCTTCC GCCGGTGGCG TAGTACAAAT CGGCCTGACG 
CTGATGGCGT CCCGTTTTCC ACAGGAGAAA GGTAAAGCGA CCGGTATTTA TTACAGCGCC 
GGCAGTATCG CGACGTTCAC TATTCCGTTG ATCACAGCGC GGATTTCAGA AATGAGCATT 
GCACATATTA TGTGGTTTGA TACCGGTATC GCCGCAGCGG GATTTCTCCT CGCGCTGTTC 
ATCGGTTACC GAAGTCGGGC TGAATCACAA CATCACGCTG AAGCAGCGTC AACTGCGCAA 
TAA
 
Protein sequence
MKNRYFPTAV GLYFNYFVHG MGVILMSLNM SSLEQQWHTS AAGVSIVISS LGIGRLSVLL 
IAGMLSDRFG RRPFIILGTA CYLIFFIGIL YAQTIFVAYA CGFLAGMANS FLDAGTYPSL 
MEAFPRSPST ANILIKAFVS GGQFLLPIII SLLVWANMWF GWSFLLAGAI MLINALFLLR 
CPFPPYPGRI LKPKISQAPV TGVHHCSLID LISYTLYGYI SMATFYLLSI YTCGSLLCVF 
ITAPLVRKTI RSTTLLMFYT FISFIALLTV CLHPQTYIVM IFAFVIGFSS AGGVVQIGLT 
LMASRFPQEK GKATGIYYSA GSIATFTIPL ITARISEMSI AHIMWFDTGI AAAGFLLALF 
IGYRSRAESQ HHAEAASTAQ