| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1925 |
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| Symbol | epaO |
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| ID | 6871685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 1859372 |
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| End bp | 1860340 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642785048 |
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| Product | type III secretion system protein |
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| Protein accession | YP_002215714 |
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| Protein GI | 198245358 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
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| TIGRFAM ID | [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.10517 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 78 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTAAGAA TAGCGAATGA AGAGCGTCCG TGGGTGGAGA TACTTCCAAC GCAAGGCGCT
ACCATTGGTG AGCTGACATT GAGTATGCAA CAATATCCAG TACAGCAAGG GACATTATTT
ACCATAAATT ATCATAATGA GCTGGGTAGG GTGTGGATTG CAGAACAATG CTGGCAGCGC
TGGTGTGAAG GGCTAATTGG CACCGCTAAT CGATCGGTTA TCGATCCTGA ATTGCTATAT
GGAATAGCTG AATGGGGGCT GGCGCCGTTA TTGCAAGCCA GTGATGCAAC CCTCTGTCAG
AACGAGCCGC CAACATCCTG CAGTAATCTA CCACATCAGC TAGCGTTGCA TATTAAATGG
ACAGTTGAAG AACATGAGTT CCATAGCATT ATTTTTACAT GGCCAACGGG TTTTTTGCGC
AATATAGTCG GAGAGCTTTC TGCTGAGCGA CAACAGATTT ATCCTGCCCC TCCTGTAGTA
GTCCCTGTAT ATTTAGGCTG GTGCCAGCTT ACGTTAATTG AACTTGAGTC TATCGAAATC
GGCATGGGCG TTCGGATTCA TTGCTTTGGC GACATCAGAC TCGGTTTTTT TGCTATTCAA
CTACCTGGGG GGATCTACGC GAGGGTGTTG CTGACAGAGG ATAACACGAT GAAATTTGAT
GAATTAGTCC AGGATATCGA AACGCTACTT GCGTCAGGGA GTCCAATGTC AAAGAGTGAC
GGAACATCTT CAGTAGAACT TGAGCAGATA CCACAACAGG TGCTCTTTGA GATCGGACGT
GCGAGTCTGG AAATTGGACA ATTACGACAA CTTAAAACGG GGGACGTTTT GCCTGTAGGT
GGATGTTTTG CGCCAGAGGT GACGATAAGA GTAAATGACC GTATTATTGG GCAAGGTGAG
TTGATTGCCT GTGGCAATGA ATTTATGGTG CGTATTACAC GTTGGTATCT TTGCAAAAAT
ACAGCGTAA
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| Protein sequence | MLRIANEERP WVEILPTQGA TIGELTLSMQ QYPVQQGTLF TINYHNELGR VWIAEQCWQR
WCEGLIGTAN RSVIDPELLY GIAEWGLAPL LQASDATLCQ NEPPTSCSNL PHQLALHIKW
TVEEHEFHSI IFTWPTGFLR NIVGELSAER QQIYPAPPVV VPVYLGWCQL TLIELESIEI
GMGVRIHCFG DIRLGFFAIQ LPGGIYARVL LTEDNTMKFD ELVQDIETLL ASGSPMSKSD
GTSSVELEQI PQQVLFEIGR ASLEIGQLRQ LKTGDVLPVG GCFAPEVTIR VNDRIIGQGE
LIACGNEFMV RITRWYLCKN TA
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