| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1924 |
|---|
| Symbol | epaP |
|---|
| ID | 6871936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 1858657 |
|---|
| End bp | 1859304 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642785047 |
|---|
| Product | type III secretion system protein |
|---|
| Protein accession | YP_002215713 |
|---|
| Protein GI | 198242436 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4790] Type III secretory pathway, component EscR |
|---|
| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0299336 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 81 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTAC CCGATTCGCC TTTGCAACTG ATTGGTATAT TGTTTCTGCT TTCAATACTG
CCTCTCATTA TCGTCATGGG AACCTCTTTC CTTAAACTGG CGGTGGTATT TTCGATTTTA
CGAAATGCTC TGGGTATTCA ACAAGTTCCC CCAAATATCG CACTGTATGG CCTCGCACTT
GTACTTTCCT TATTCATTAT GGGGCCGACG CTATTAGCGG TAAAAGAGCG CTGGCATCCG
GTTCAGGTCG CTGGCGCTCC TTTCTGGACG TCTGAGTGGG ACAGTAAAGC ATTAGCGCCT
TATCGACAGT TTTTGCAAAA AAACTCTGAA GAGAAGGAAG CCAATTATTT TCGGAATTTG
ATAAAACGAA CTTGGCCTGA AGACATAAAA AGAAAGATAA AACCTGATTC TTTGCTCATA
TTAATTCCGG CATTTACGGT GAGTCAGTTA ACGCAGGCAT TTCGGATTGG ATTACTTATT
TATCTTCCCT TTCTGGCTAT TGACCTGCTT ATTTCAAATA TACTGCTGGC TATGGGGATG
ATGATGGTGT CGCCGATGAC CATTTCATTA CCGTTTAAGC TGCTAATATT TTTACTGGCA
GGCGGTTGGG ATCTGACACT GGCGCAATTG GTACAGAGCT TTTCATGA
|
|---|
| Protein sequence | MSLPDSPLQL IGILFLLSIL PLIIVMGTSF LKLAVVFSIL RNALGIQQVP PNIALYGLAL
VLSLFIMGPT LLAVKERWHP VQVAGAPFWT SEWDSKALAP YRQFLQKNSE EKEANYFRNL
IKRTWPEDIK RKIKPDSLLI LIPAFTVSQL TQAFRIGLLI YLPFLAIDLL ISNILLAMGM
MMVSPMTISL PFKLLIFLLA GGWDLTLAQL VQSFS
|
|---|
| |