Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1918 |
Symbol | |
ID | 6874076 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 1854713 |
End bp | 1856086 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642785041 |
Product | multidrug efflux protein |
Protein accession | YP_002215709 |
Protein GI | 198243327 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00462926 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 85 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCAGAAGT ATACCAGTGA AGCGCGTCAG TTATTAGCGT TAGCGATACC GGTGATCCTT GCGCAAGTGG CACAGACCGC AATGGGATTC GTCGATACCG TCATGGCGGG AGGCTATAGC GCTACGGACA TGGCTGCCGT CGCTATCGGC ACCTCTATCT GGCTTCCCGC CATTTTGTTT GGTCACGGCT TACTGCTGGC CTTGACGCCT GTGATTGCGC AACTCAATGG CTCCGGCCGT CGTGAGCGTA TCGCGCATCA GGTTCGACAA GGGTTCTGGC TGGCGGGCTT TGTCTCCGTG CTGGTGATGA TCGTCCTGTG GAATGCCGGA TACATTATCC GCTCTATGCA TAATATTGAT CCGGCGCTGG CCGATAAAGC CGTGGGTTAT CTTCGCGCGC TGCTGTGGGG CGCGCCAGGA TACCTTTTCT TTCAGGTAGC GCGAAACCAG TGCGAAGGTC TGGCCAAAAC CAAACCGGGT ATGGTGATGG GATTTTTGGG CCTGCTGGTG AATATTCCGG TGAACTATAT TTTTATCTAT GGCCATTTTG GTATGCCGGA ACTCGGCGGT ATCGGCTGCG GCGTTGCGAC TGCGGCGGTC TATTGGGTGA TGTTTATCGC CATGCTTTCT TACATTAAAC ACGCGCGTTC AATGCGTGAT ATTCGTAATG AAAAAGGCTT TGGCAAACCT GATAGCGTCG TCATGAAGCG CCTGATTCAA CTGGGGTTGC CGATTGCGCT GGCGCTGTTC TTTGAAGTGA CGTTATTTGC GGTCGTTGCG CTGCTGGTTT CGCCATTAGG TATTGTGGAT GTCGCCGGTC ATCAGATTGC GCTTAACTTT AGCTCGCTGA TGTTCGTACT GCCGATGTCG CTGGCTGCGG CGGTAACGAT TCGAGTGGGT TATCGTCTGG GCCAGGGCTC AACGCTGGAT GCGCAAACCG CAGCGCGTAC CGGTTTAGGC GTCGGCATTT GTATGGCTGT GGTTACCGCT ATTTTTACCG TTACTCTGCG TAAGCATATT GCTTTGCTCT ACAATGACAA CCCTGAGGTC GTGGCGCTTG CCGCGCAATT AATGCTGCTC GCTGCGGTTT ACCAGATTTC CGACTCTATA CAGGTTATCG GCAGCGGTAT TCTGCGCGGT TATAAAGATA CGCGTTCCAT CTTTTTTATC ACCTTTACCG CCTACTGGGT GTTAGGTTTA CCCAGCGGTT ATATCCTGGC GTTAACGGAT TTGGTGGTGG ATCGTATGGG ACCGGCAGGC TTCTGGATGG GGTTCATCAT CGGCCTGACC TCGGCGGCGG TGTTAATGAT GCTACGGATG CGCTATCTAC AACGTCAGCC GTCCGCCATC ATTTTGCAGC GCGCTGCGCG ATAA
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Protein sequence | MQKYTSEARQ LLALAIPVIL AQVAQTAMGF VDTVMAGGYS ATDMAAVAIG TSIWLPAILF GHGLLLALTP VIAQLNGSGR RERIAHQVRQ GFWLAGFVSV LVMIVLWNAG YIIRSMHNID PALADKAVGY LRALLWGAPG YLFFQVARNQ CEGLAKTKPG MVMGFLGLLV NIPVNYIFIY GHFGMPELGG IGCGVATAAV YWVMFIAMLS YIKHARSMRD IRNEKGFGKP DSVVMKRLIQ LGLPIALALF FEVTLFAVVA LLVSPLGIVD VAGHQIALNF SSLMFVLPMS LAAAVTIRVG YRLGQGSTLD AQTAARTGLG VGICMAVVTA IFTVTLRKHI ALLYNDNPEV VALAAQLMLL AAVYQISDSI QVIGSGILRG YKDTRSIFFI TFTAYWVLGL PSGYILALTD LVVDRMGPAG FWMGFIIGLT SAAVLMMLRM RYLQRQPSAI ILQRAAR
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