Gene SeD_A1875 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1875 
SymbolfumB 
ID6873831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp1814288 
End bp1815934 
Gene Length1647 bp 
Protein Length548 aa 
Translation table11 
GC content55% 
IMG OID642785001 
Productfumarate hydratase class I, anaerobic 
Protein accessionYP_002215669 
Protein GI198245417 
COG category[C] Energy production and conversion 
COG ID[COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain 
TIGRFAM ID[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.27379 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAACA AACCCTTCTT TTATCAAGAC CCTTTTCCCC TCAAAAAGGA CGATACCGAG 
TACTACTTGT TGACCAGCGA ACATGTTTCC GTCGCCGAAT TCGAAGGACA AGAGATCCTG 
AAAGTCGCGC CGGAAGCGCT AACGCTGTTG GCGCGTCAGG CCTTCCACGA TGCGTCTTTT 
ATGCTACGTC CCGCGCATCA GCAGCAGGTG GCGGATATTC TGCGCGATCC GCAGGCCAGT 
GAAAACGACA AATATGTCGC GCTGCAATTC CTGCGAAACT CCGATATCGC GGCCAAGGGC 
GTGTTGCCCA CCTGCCAGGA TACCGGTACG GCCATTATTG TCGGCAAAAA AGGCCAACGC 
GTCTGGACTG GTGGAGGTGA TGAAGCGGCG CTGGCTCGCG GCGTATATAA CACCTATATC 
GAAGATAACC TGCGCTATTC GCAGAACGCG GCGCTGGATA TGTACAAAGA GGTCAATACC 
GGTACTAACC TGCCGGCGCA GATCGATCTC TACAGCGTCG ATGGCGATGA ATATAAATTC 
CTTTGTATTG CTAAAGGCGG CGGTTCGGCG AATAAAACCT ACCTCTATCA GGAGACAAAA 
GCGCTTCTGA CGCCGGGTAA GCTCAAAAAT TATCTCGTCG ATAAGATGCG TACGCTGGGC 
ACCGCCGCCT GTCCGCCGTA TCACATTGCG TTTGTCATTG GCGGCACCTC GGCGGAAGCG 
AACCTGAAGA CCGTTAAGCT GGCCTCGGCA AAATACTATG ATGCGCTACC AACCGAAGGC 
AATGAACACG GGCAGGCCTT CCGCGATATT GAGCTGGAAA AAGAATTGTT GCTTGAGGCG 
CAAAATCTTG GCTTAGGCGC GCAGTTCGGC GGCAAATATT TCGCTCACGA TATTCGTGTC 
ATCCGATTGC CGCGTCACGG GGCATCGTGT CCGGTAGGTA TGGGCGTGTC CTGCTCCGCG 
GATCGAAACA TTAAAGCGAA GATCAACCGG GAAGGGATCT GGATCGAGAA GCTGGAGCGC 
AATCCCGGTA AATATATTCC TGAGGCGCTG CGCCAGGCGG GAGAGGGCGA GGCGGTGCGC 
GTTGATCTTA ACCGTCCCAT GAGCGAGATA CTGCAACAAT TGTCGCAGTA TCCGGTATCA 
ACGCGCCTGT CGCTGAACGG CACAATTATT GTGGGCCGCG ACATCGCGCA CGCTAAACTG 
AAAGAACGGA TGGACAGCGG CGAAGGTTTG CCGCAGTACA TCAAAGATCA TCCTATCTAT 
TATGCGGGGC CGGCAAAAAC GCCGGAAGGG TACGCCTCCG GGTCGCTTGG GCCGACTACC 
GCAGGACGGA TGGACTCTTA TGTTGATCAG CTCCAGTCGC AGGGCGGCAG TATGATCATG 
TTGGCGAAAG GCAACCGCAG CCAGCAGGTG ACCGATGCCT GTAAGAAACA TGGCGGCTTC 
TACCTGGGCA GTATCGGCGG CCCGGCAGCC GTTCTGGCGC AGGGCAGTAT CAAGCGCCTG 
GAGTGCGTGG AATATCCTGA ACTGGGTATG GAGGCTATCT GGAAAATTGA AGTGGAGGAT 
TTTCCGGCCT TTATTCTGGT GGATGATAAA GGCAACGATT TCTTCCAGCA GATTCAGTCA 
TCGCAGTGCG CACGCTGCGT TAAGTAA
 
Protein sequence
MSNKPFFYQD PFPLKKDDTE YYLLTSEHVS VAEFEGQEIL KVAPEALTLL ARQAFHDASF 
MLRPAHQQQV ADILRDPQAS ENDKYVALQF LRNSDIAAKG VLPTCQDTGT AIIVGKKGQR 
VWTGGGDEAA LARGVYNTYI EDNLRYSQNA ALDMYKEVNT GTNLPAQIDL YSVDGDEYKF 
LCIAKGGGSA NKTYLYQETK ALLTPGKLKN YLVDKMRTLG TAACPPYHIA FVIGGTSAEA 
NLKTVKLASA KYYDALPTEG NEHGQAFRDI ELEKELLLEA QNLGLGAQFG GKYFAHDIRV 
IRLPRHGASC PVGMGVSCSA DRNIKAKINR EGIWIEKLER NPGKYIPEAL RQAGEGEAVR 
VDLNRPMSEI LQQLSQYPVS TRLSLNGTII VGRDIAHAKL KERMDSGEGL PQYIKDHPIY 
YAGPAKTPEG YASGSLGPTT AGRMDSYVDQ LQSQGGSMIM LAKGNRSQQV TDACKKHGGF 
YLGSIGGPAA VLAQGSIKRL ECVEYPELGM EAIWKIEVED FPAFILVDDK GNDFFQQIQS 
SQCARCVK