Gene SeD_A1872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1872 
Symbol 
ID6871632 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1810414 
End bp1811715 
Gene Length1302 bp 
Protein Length433 aa 
Translation table11 
GC content54% 
IMG OID642784998 
Productsensor protein RstB 
Protein accessionYP_002215666 
Protein GI198245106 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones1 
Plasmid unclonability p-value0.00123019 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones64 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGC TGTTTGTGCA GTTTTACCTT TTGCTGTTCG TCTGTTTTCT GGTCATGACC 
TTATTGGTCG GACTGGTGTA CAAATTCACC GCCGAACGCG CGGGCAGGCA ATCGCTCGAC 
GATCTGATGA AAAGTTCGCT CTATCTGATG CGCAGCGAAC TGCGGGAAAT TCCGCCGCGT 
GAATGGGGGA AAACGTTAAA AGAGATGGAC CTGAACCTCT CTTTCGATTT ACGCGTTGAA 
CCGTTAAATC ACTATAAGCT TGATGCCGCC ACCACGCAGC GACTGCGTGA AGGCGATATT 
GTCGCGCTTG ACGATCAATA CACCTTTATT CAGCGTATCC CGCGCAGCCA TTACGTCCTG 
GCGGTTGGCC CGGTTCCCTA TCTCTATTTC CTGCATCAAA TGCGACTGCT GGATATCGCC 
TTAATGGCGC TCATTGCCTT TTCTCTCGCC TTTCCTGTGT TTATCTGGAT GCGCCCGCAC 
TGGCAAGAAA TGCTCAGGCT CGAATCCGCC GCGCAGCGCT TTGGCGAGGG TCATTTGACT 
GAACGCCTGC ACTTCGATAA TGGCTCCAGT TTCGAACGTC TGGGCGTCGC GTTCAACCAG 
ATGGCGGATA ACATTAATGC CCTGATCGCC AGTAAAAAAC AGCTGATTGA CGGTATCGCC 
CATGAGCTTC GCACGCCGCT GGTACGTTTA CGCTATCGGC TTGAAATGAG TGAAAATCTG 
ACACCGCCGG AATCACAGGC GCTCAATCGC GATATTGGTC AACTGGAAGC GCTGATTGAA 
GAACTGCTCA CCTATGCGCG CCTTGACCGA CCACAAAATG AACTGATGTT GACCGAACCC 
GACCTCCCCG CATGGTTGCT CGCGCATTTG CAGGATGTGC AGAGCGTGAC CCCGGAACGT 
GCCGTAAACC TTCTCACATG TGTAATCGGC GATTATGGCG CGCTTGATAT GCGGTTAATG 
TCGCGAGTGC TGGATAACCT GCTGAATAAT GCGTTGCGCT ACAGTCGTAC CACCGTTCAG 
GTCAGCCTGT TACTCGACGG CAGTCAGGCA ACGTTGATAG TCGAAGATGA TGGCCCCGGC 
ATTGAAGCGG ATGCGCGTGA GCGCATATTT GAACCTTTTG TCAGACTCGA CCCCAGTAGA 
GACCGGGCGA CAGGCGGCTG CGGGCTTGGA CTCGCCATCG TACACTCTAT CGCCCTGGCG 
ATGGGCGGTA GCGTCGTCTG TGACGAGAGC GAACTGGGCG GCGCAAAATT TAGTTTTCGC 
TGGCCGGTCT GGCACGCGAT GCCCGACATG ACCGCTGCCT GA
 
Protein sequence
MKKLFVQFYL LLFVCFLVMT LLVGLVYKFT AERAGRQSLD DLMKSSLYLM RSELREIPPR 
EWGKTLKEMD LNLSFDLRVE PLNHYKLDAA TTQRLREGDI VALDDQYTFI QRIPRSHYVL 
AVGPVPYLYF LHQMRLLDIA LMALIAFSLA FPVFIWMRPH WQEMLRLESA AQRFGEGHLT 
ERLHFDNGSS FERLGVAFNQ MADNINALIA SKKQLIDGIA HELRTPLVRL RYRLEMSENL 
TPPESQALNR DIGQLEALIE ELLTYARLDR PQNELMLTEP DLPAWLLAHL QDVQSVTPER 
AVNLLTCVIG DYGALDMRLM SRVLDNLLNN ALRYSRTTVQ VSLLLDGSQA TLIVEDDGPG 
IEADARERIF EPFVRLDPSR DRATGGCGLG LAIVHSIALA MGGSVVCDES ELGGAKFSFR 
WPVWHAMPDM TAA