Gene SeD_A1870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1870 
Symbol 
ID6870962 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1807293 
End bp1808444 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content48% 
IMG OID642784996 
Productouter membrane protein N 
Protein accessionYP_002215664 
Protein GI198243329 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.098119 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones69 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGAA AAGTATTGGC ACTTGTCATC CCGGCTCTGC TGGCTGCTGG CGCAGCACAC 
GCCGCTGAAA TTTATAACAA AGACGGCAAC AAACTGGACC TTTACGGGAA AGTAGACGGC 
CTGCACTATT TCTCTGATGA CTCTTCTAAA GATGGCGATC AGACCTATAT GCGTGTCGGC 
TTTAAAGGCG AAACGCAGAT TAACGACCAA CTGACCGGTT ACGGCCAGTG GGAATATAAC 
GTTCAGGCTA ACACTACCGA AGGCGAAGGC GCTAATTCCT GGACTCGTCT GGTATTCGCC 
GGCCTGAAAT TCGGCGACTA CGGCTCATTC GACTATGGTC GTAACTACGG CGTCCTGTAC 
GACGTAGAAG GCTGGACCGA TATGCTGCCT GAGTTCGGCG GCGACTCCTA TACTTACGCT 
GACAACTACA TGACCGGTCG TGCTAACGGC GTGGCCACCT ACCGTAACAC TGATTTCTTC 
GGTCTGGTAG ACGGTCTGAA CTTCGCGTTG CAATATCAGG GTAAAAATGA AAGCCAAAGC 
GCTGACGATG TAAATATCGG TACCAATAAC CGTAATAATG GCGACGATAT TCGTTACGAT 
AACGGTGATG GCTTCGGTAT TTCTACTACC TATGATATTG GCATGGGCTT CAGCGCAGGC 
GCTGCGTATA CCACTTCCGA TCGTACTAAT GAGCAAGTCA ATGCTGGCGG CACGATTGCT 
GGCGGCGACA AAGCGGATGC ATGGACAGCT GGCTTGAAAT ATGATGCCAA CAACATCTAT 
TTAGCGACTA TGTATTCTGA AACCCGTAAT ATGACGCCTT ATGGTAAAAC GGATGCGGGT 
TATGCTGGCG GCGTAGCAAA CAAAACGCAA AACTTCGAAG TTACAGCCCA ATATCAATTT 
GATTTCGGTC TGCGCCCGGC GGTTTCTTTC CTGATGTCTA AAGGTAAAGA TCTGACCTAT 
AACAACGTTA ATGGCGATGA TAAAGACCTG GTTAAATATG CTGATGTAGG TGCTACCTAC 
TATTTCAACA AAAACTTCTC CACCTATGTT GATTATAAAA TCAACCTGCT GGATGATGAC 
GACCAGTTCT ATAAAGATGC CGGTATCAGC ACTGATGATA TCGTCGCGCT GGGTATGGTT 
TACCAGTTCT AA
 
Protein sequence
MKRKVLALVI PALLAAGAAH AAEIYNKDGN KLDLYGKVDG LHYFSDDSSK DGDQTYMRVG 
FKGETQINDQ LTGYGQWEYN VQANTTEGEG ANSWTRLVFA GLKFGDYGSF DYGRNYGVLY 
DVEGWTDMLP EFGGDSYTYA DNYMTGRANG VATYRNTDFF GLVDGLNFAL QYQGKNESQS 
ADDVNIGTNN RNNGDDIRYD NGDGFGISTT YDIGMGFSAG AAYTTSDRTN EQVNAGGTIA 
GGDKADAWTA GLKYDANNIY LATMYSETRN MTPYGKTDAG YAGGVANKTQ NFEVTAQYQF 
DFGLRPAVSF LMSKGKDLTY NNVNGDDKDL VKYADVGATY YFNKNFSTYV DYKINLLDDD 
DQFYKDAGIS TDDIVALGMV YQF