Gene SeD_A1848 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1848 
Symbol 
ID6874987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1788428 
End bp1789576 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content53% 
IMG OID642784978 
Productcholine transport ATP-binding protein opuBA 
Protein accessionYP_002215646 
Protein GI198244912 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1125] ABC-type proline/glycine betaine transport systems, ATPase components 
TIGRFAM ID[TIGR01186] glycine betaine/L-proline transport ATP binding subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.607667 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones76 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAAAC TGGAAAATCT CACCAAACAA TTTGTACAGA AAAAGGGTCA GCCGCTAAAA 
GCCGTCGACA ACGTCAACCT GAACGTGCCG GAAGGCGAAA TGTGCGTCTT ACTCGGTCCC
TCCGGCTGCG GCAAAACCAC CACGTTAAAG ATGATCAACC GGCTGATCGC GCCCAGCAGC
GGTAATATTC TTATCAACGG CGAGAATACC AACGATATGG ATACGGTAAC GCTACGCCGC
AATATTGGGT ATGTTATCCA GCAGATCGGC CTGTTTCCTA ATATGACGAT TGAAGAAAAT
ATTACCGTTG TGCCGCGCAT GTTGGGTTGG GACAAAGCGC GCTGCAAGCA ACGCGCCGAA
GAGTTGATGG ACATGGTGGC GCTGGATGCC AGAAAATTTC TGCATCGCTA TCCAAAGGAG
ATGTCCGGGG GACAGCAACA GCGTATTGGC GTGATCCGCG CTCTGGCCGC CGATCCGCCG
GTACTGCTGA TGGATGAGCC CTTCGGCGCG GTGGACCCCA TTAACCGCGA AGTGATCCAG
AACCAGTTTC TGGATATGCA GCGTAAGCTA AAAAAGACCG TGATGCTGGT CAGCCATGAT
ATCGACGAAG CGCTAAAGCT CGGCGACCGT ATCGCCGTGT TCCGTCAGGG GCGAATTGTA
CAGTGCGCCA GTCCTGATGA ACTGCTGGCC AAACCGGCTA ACGAGTTTGT CGGGTCGTTT
GTCGGTCAGG ACAGAACGTT AAAGCGTTTG CTACTGGTCT CCGCGGGCGA TGTTACCGAC
CAACAGCCAA CCATTACCGC GCGGCCTTCC ATGCCGTTAA GCGAGGCATT CGGCATTATG
GATGATCACG ATATTCGCGC CATTACCGTC ATTGACAACG ACGGTAAGCC ACTGGGATTT
GTGAAGCGCC GGGAAGCGCG GAACGCCAGC GGAATCTGCG CCGATATCAC CCATCCTTTC
CGTATTACGG GCAAAGCGGA AGATAATCTG CGTATTGTGC TGTCCAGATT GTACGAAAGT
AATACTAGCT GGATGCCGAT CGTTGATGAA GACGGACGCT ATAACGGTGA AATCTCTCAG
GATTACATCG CCGATTATCT CAGCTCAGGC CGCACGCGTC GGGCGCTAAA TATTCACGAA
AGCAGCTAA
 
Protein sequence
MIKLENLTKQ FVQKKGQPLK AVDNVNLNVP EGEMCVLLGP SGCGKTTTLK MINRLIAPSS 
GNILINGENT NDMDTVTLRR NIGYVIQQIG LFPNMTIEEN ITVVPRMLGW DKARCKQRAE
ELMDMVALDA RKFLHRYPKE MSGGQQQRIG VIRALAADPP VLLMDEPFGA VDPINREVIQ
NQFLDMQRKL KKTVMLVSHD IDEALKLGDR IAVFRQGRIV QCASPDELLA KPANEFVGSF
VGQDRTLKRL LLVSAGDVTD QQPTITARPS MPLSEAFGIM DDHDIRAITV IDNDGKPLGF
VKRREARNAS GICADITHPF RITGKAEDNL RIVLSRLYES NTSWMPIVDE DGRYNGEISQ
DYIADYLSSG RTRRALNIHE SS