Gene SeD_A1827 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1827 
Symbol 
ID6874442 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1769427 
End bp1770113 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content51% 
IMG OID642784959 
ProductGntR family transcriptional regulator 
Protein accessionYP_002215627 
Protein GI198244570 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.000849458 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones96 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGTCG AAACGCAGCT TAACCCTACA CAGCCTGTCA ACCAGCAAAT TTACCGTATT 
CTTCGGCGTG ATATCGTGCA TTGTCTGATC CCGCCTGGCA CGCCGCTATC AGAAAAAGAG 
GTCTCAACCC GTTTTAACGT TTCGCGTCAA CCGGTGCGCG AGGCTTTTAT AAAGCTGGCG 
GAAAATGGGT TGATTCAGAT CCGCCCTCAG CGCGGTAGTT ATGTGAATAA GATTTCGCTT 
TCTCAGGTAC AGAATGGCTG CTTTGTTCGG CAGGCGATCG AATGCGCGGT GGTCCGCCGT 
GCGGCGGCGA TGATCACCGA CAACCAGTGC TATCAACTGG CGCAAAACCT GCACCTGCAA 
CATATTGCCA TCGAGCGCAA ACAGATTGAT GATTTTTTCC AGCTTGATGA CGATTTCCAC 
CAAAAGCTGG CGCAGATCGC CGATTGCCAG TTAGCGTGGA ATACCATTGA AAATATCAAA 
GCGACAATCG ACCGGGTTCG CTATATGAGT CTGGATCATG TTTCTCCGCC GGAGATGTTG 
TTGCGCCAGC ACCATGATAT TTTCTCCGCG CTGGAAAATC GTGACGGCAA TGCGGTTGAG 
AGCGCAATGA CCCAGCATTT GCAGGAAATT AGCGAATCCG TTCAGCTTAT CCGTCAGGAA 
AACAGCGGCT GGTTTAGCGA AGAGTAA
 
Protein sequence
MTVETQLNPT QPVNQQIYRI LRRDIVHCLI PPGTPLSEKE VSTRFNVSRQ PVREAFIKLA 
ENGLIQIRPQ RGSYVNKISL SQVQNGCFVR QAIECAVVRR AAAMITDNQC YQLAQNLHLQ 
HIAIERKQID DFFQLDDDFH QKLAQIADCQ LAWNTIENIK ATIDRVRYMS LDHVSPPEML 
LRQHHDIFSA LENRDGNAVE SAMTQHLQEI SESVQLIRQE NSGWFSEE