Gene SeD_A1812 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1812 
Symbol 
ID6875052 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1758173 
End bp1759045 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content57% 
IMG OID642784946 
Productputative LysR substrate binding domain-containing protein 
Protein accessionYP_002215614 
Protein GI198246232 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones102 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCTGA CGCAACTGGA AATGTTTAAC GCTGTCGCTC TGACGGGCAG CATTACGCAG 
GCGGCGGCAA AAGTACACCG CGTTCCGTCC AACCTGACCA CGCGTATCCG CCAGCTTGAA 
GCCGACCTGG GCGTCTCTCT GTTTATTCGC GAAAACCAGC GACTCAGGCT GTCACCAGCC 
GGGCATAACT TTTTACGTTA CAGCCAGCAG ATCCTGGCGC TGGTCGATGA AGCCCGCATG 
GTGGTTGCCG GAGAGGAACC GCAAGGACTG TTTTCACTCG GCGCGTTAGA AAGTACTGCC 
GCCGTACGTA TCCCCGCGCT GCTGGCGGGT TATAACCAGC GTTACCCTAA AATTCAGTTC 
GCGTTAACGA CCGGTCCTTC CGGCGCCATG CTGGATGGCG TGCTCGAGGG AAAGCTGAAC 
GCCGCCTTTA TTGATGGCCC GCTAATGCAT CCGGGGCTGG AAGGTATACC GGCTTACCAG 
GAAGAGATGA TGATCGTCGC GCCACACGGC CATTCCGTCG TTTCGCGGGC CAGCGAGGTG 
AATGGTTATA ACATCTATGC TTTTCGCGCC AACTGTTCTT ACCGACGGCA TTTCGAAAGC 
TGGTTTCATG CCGATGGCGC GACCCCCGGT ACGATTCACG AAATGGAGTC ATATCATGGA 
ATGTTGGCGT GCGTAATTGC CGGCGCAGGT ATTGCGCTGA TGCCAGCAAG TATGCTCAAC 
AGTATGCCAG GACATCATCA GGTGGAAGCC TGGCCGCTGG CGGAGAAGTG GCGCTGGCTT 
AACACATGGC TAATGTGGCG GCGCGGGGCG ATGACGCGTC AGCTTGAGGC CTTTATCGAG 
TTACTTAACG CCCAACTGGC GAGCGTCGAC TGA
 
Protein sequence
MDLTQLEMFN AVALTGSITQ AAAKVHRVPS NLTTRIRQLE ADLGVSLFIR ENQRLRLSPA 
GHNFLRYSQQ ILALVDEARM VVAGEEPQGL FSLGALESTA AVRIPALLAG YNQRYPKIQF 
ALTTGPSGAM LDGVLEGKLN AAFIDGPLMH PGLEGIPAYQ EEMMIVAPHG HSVVSRASEV 
NGYNIYAFRA NCSYRRHFES WFHADGATPG TIHEMESYHG MLACVIAGAG IALMPASMLN 
SMPGHHQVEA WPLAEKWRWL NTWLMWRRGA MTRQLEAFIE LLNAQLASVD