Gene SeD_A1777 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1777 
Symbol 
ID6875590 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1721017 
End bp1722714 
Gene Length1698 bp 
Protein Length565 aa 
Translation table11 
GC content53% 
IMG OID642784912 
Productmalate dehydrogenase 
Protein accessionYP_002215580 
Protein GI198244343 
COG category[C] Energy production and conversion 
COG ID[COG0281] Malic enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones69 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAACTA TAACCAAGAA AGCACGTTCC CTTTATATCC CTTACGCTGG CCCTGTATTG 
CTGGAATTCC CCCTGTTAAA CAAAGGCAGC GCTTTTAGCG TAGAAGAGCG CCGCAACTTC
AATTTGTCAG GGCTGCTGCC AGAGGTCGTC GAGTCGATTG AAGAACAGGC CGAACGCGCC
TGGCTCCAGT ATCAGGGGTT TAAAACAGAA ATCGATAAGC ATATTTACCT GCGTAACATC
CAGGATACCA ACGAAACGCT CTTTTATCGA CTGGTGCAAA ACCATCTTGA AGAGATGATG
CCGGTTATCT ATACCCCGAC CGTGGGCGCG GCCTGTGAGC GCTTCTCTGA GATTTATCGC
CGGGCGCGCG GCGTATTTAT CTCTTATCCG AACCGTCACA ATATGGACGA CATTTTGCAG
AATGTGCCTA ACCACAACAT TAAAGTTATT GTGGTGACGG ATGGCGAGCG GATTCTGGGG
CTTGGCGATC AGGGCATCGG CGGGATGGGG ATCCCTATCG GTAAGCTGTC ATTATACACC
GCCTGCGGCG GCATTAGTCC GGCCTATACC CTTCCCGTTG TGCTGGATGT CGGCACCAAC
AATCAACAGT TACTCAACGA TCCGCTTTAC ATGGGCTGGC GTCATCCGCG CATTACCGAC
GATGAGTATT ATGCGTTTGT CGATGAGTTT ATTCAGGCCG TTAAGCAGCG CTGGCCAGAT
ATCCTGCTAC AGTTTGAAGA TTTCGCGCAG AAAAACGCAA TGCCGCTGTT GACGCGCTAT
CGTGATGAGA TTTGCTCCTT TAACGATGAT ATTCAGGGCA CCGCAGCCGT GACCGTCGGT
ACGTTGATCG CCGCCAGCCG CGCTGCCGGC AGTCAGCTTA GCGAGCAGAA AATCGTTTTC
CTCGGCGCGG GTTCTGCCGG ATGTGGGATT GCTGAACAAA TCATCGCGCA GACTCAGCGT
GAAGGTTTAA GCGAAGATGC CGCTCGACAG AACGTTTTTA TGGTCGATCG CTTCGGCCTG
TTGACGGACC GGATGCCTAA TTTATTGCCG TTCCAGGCAA AACTGGTGCA GAAATGCGAC
AATCTCCAGC ACTGGGATAC CGAAAATGAC GTGCTGTCGC TGCTGGATGT GGTGCGTAAC
GTGAAGCCGG ATATCCTGAT CGGGGTTTCC GGCCAGACCG GGCTCTTTAC TGAAGAGATC
ATCCGCGAGA TGCATAAGCA TTGCCCTCGC CCGATCGTCA TGCCGCTCTC TAATCCCACC
TCTCGCGTGG AGGCCACGCC ACAGGACATT ATCGCCTGGA CGGAAGGCAA CGCGCTGGTG
GCAACCGGCA GTCCATTCTC GCCGGTCATC TGGAAAGATA AGATTTATCC GATCGCACAA
TGTAATAACG CCTATATTTT CCCCGGCATC GGTCTGGGGG TTATCGCTTC CGGCGCATCG
CGCATTACTG ATGAAATGCT GATGTCAGCC AGTGAGACGC TGGCGAAACA TTCTCCGCTG
GTCAATAACG GCGAAGGATT AGTGTTACCA GCGCTTAAAG ACATCCAGGT CGTGTCGCGC
GCTATCGCTT TTGCCGTAGG TAAAATGGCG CAGCAACAAG GCGTAGCGGT GAAAACCTCT
GCGGAAGCGC TGCAACAGGC GATTGACGAT AACTTCTGGA AACCGGAATA CCGCGACTAC
CGTCGGACTT CCATTTAA
 
Protein sequence
METITKKARS LYIPYAGPVL LEFPLLNKGS AFSVEERRNF NLSGLLPEVV ESIEEQAERA 
WLQYQGFKTE IDKHIYLRNI QDTNETLFYR LVQNHLEEMM PVIYTPTVGA ACERFSEIYR
RARGVFISYP NRHNMDDILQ NVPNHNIKVI VVTDGERILG LGDQGIGGMG IPIGKLSLYT
ACGGISPAYT LPVVLDVGTN NQQLLNDPLY MGWRHPRITD DEYYAFVDEF IQAVKQRWPD
ILLQFEDFAQ KNAMPLLTRY RDEICSFNDD IQGTAAVTVG TLIAASRAAG SQLSEQKIVF
LGAGSAGCGI AEQIIAQTQR EGLSEDAARQ NVFMVDRFGL LTDRMPNLLP FQAKLVQKCD
NLQHWDTEND VLSLLDVVRN VKPDILIGVS GQTGLFTEEI IREMHKHCPR PIVMPLSNPT
SRVEATPQDI IAWTEGNALV ATGSPFSPVI WKDKIYPIAQ CNNAYIFPGI GLGVIASGAS
RITDEMLMSA SETLAKHSPL VNNGEGLVLP ALKDIQVVSR AIAFAVGKMA QQQGVAVKTS
AEALQQAIDD NFWKPEYRDY RRTSI