Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1770 |
Symbol | |
ID | 6871237 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 1712270 |
End bp | 1713358 |
Gene Length | 1089 bp |
Protein Length | 362 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642784907 |
Product | outer membrane porin protein LC |
Protein accession | YP_002215575 |
Protein GI | 198242507 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 65 |
Fosmid unclonability p-value | 0.895795 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTTA AGTTAGTGGC AGTGGCAGTG ACTTCCCTGT TGGCAGCAGG CGTTGTAAAT GCAGCCGAGG TATATAACAA AGACGGCAAT AAACTGGATC TGTACGGTAA AGTTCACGCT CAGCATTATT TCTCTGATGA TAACGGAAGT GATGGTGACA AAACTTACGC GCGTCTGGGC TTTAAAGGCG AAACTCAGAT CAACGATCAG TTAACCGGTT TTGGCCAGTG GGAATATGAA TTCAAAGGCA ACCGTACTGA AAGCCAGGGC GCTGACAAAG ACAAAACCCG TCTGGCGTTT GCTGGTCTGA AATTCGCTGA CTACGGTTCT TTCGACTACG GTCGTAACTA CGGCGTTGCT TACGACATCG GCGCATGGAC CGACGTTCTG CCAGAGTTCG GTGGCGATAC CTGGACTCAG ACTGACGTCT TCATGACTGG CCGTACTACT GGTGTTGCCA CCTACCGTAA CACTGACTTC TTTGGCCTGG TTGAAGGTCT GAACTTTGCC GCGCAGTACC AGGGCAAAAA CGACCGTGAC GGCGCGTACG AGTCTAACGG CGACGGTTTC GGTCTGTCCG CAACGTATGA GTACGAAGGT TTTGGCGTAG GTGCGGCCTA TGCGAAGTCT GACCGTACTA ACAACCAGGT GAAAGCAGCG AGCAACCTGA ATGCTGCGGG TAAAAACGCT GAAGTCTGGG CTGCTGGTCT GAAATATGAT GCGAACAACA TCTACCTGGC GACCACCTAC TCCGAAACGC TGAACATGAC CACCTTTGGT GAAGATTCAG CGGGTGATGC GTTTATCGCG AATAAAACCC AGAACTTTGA AGCAGTTGCT CAGTATCAGT TCGACTTCGG TCTGCGTCCG TCCATCGCTT ACCTGAAATC CAAAGGTAAA AACCTGGGTA CTTACGGCGA CCAGGATCTG GTTGAGTACA TCGATGTCGG TGCTACCTAC TACTTCAACA AAAACATGTC CACCTTCGTT GATTACAAAA TCAACCTGCT GGACGACAGC GACTTCACCA AAGCGGCTAA AGTGTCTACC GACAACATCG TTGCTGTTGG TCTGAACTAC CAGTTCTAA
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Protein sequence | MKLKLVAVAV TSLLAAGVVN AAEVYNKDGN KLDLYGKVHA QHYFSDDNGS DGDKTYARLG FKGETQINDQ LTGFGQWEYE FKGNRTESQG ADKDKTRLAF AGLKFADYGS FDYGRNYGVA YDIGAWTDVL PEFGGDTWTQ TDVFMTGRTT GVATYRNTDF FGLVEGLNFA AQYQGKNDRD GAYESNGDGF GLSATYEYEG FGVGAAYAKS DRTNNQVKAA SNLNAAGKNA EVWAAGLKYD ANNIYLATTY SETLNMTTFG EDSAGDAFIA NKTQNFEAVA QYQFDFGLRP SIAYLKSKGK NLGTYGDQDL VEYIDVGATY YFNKNMSTFV DYKINLLDDS DFTKAAKVST DNIVAVGLNY QF
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