Gene SeD_A1770 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1770 
Symbol 
ID6871237 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1712270 
End bp1713358 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content50% 
IMG OID642784907 
Productouter membrane porin protein LC 
Protein accessionYP_002215575 
Protein GI198242507 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones65 
Fosmid unclonability p-value0.895795 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTTA AGTTAGTGGC AGTGGCAGTG ACTTCCCTGT TGGCAGCAGG CGTTGTAAAT 
GCAGCCGAGG TATATAACAA AGACGGCAAT AAACTGGATC TGTACGGTAA AGTTCACGCT
CAGCATTATT TCTCTGATGA TAACGGAAGT GATGGTGACA AAACTTACGC GCGTCTGGGC
TTTAAAGGCG AAACTCAGAT CAACGATCAG TTAACCGGTT TTGGCCAGTG GGAATATGAA
TTCAAAGGCA ACCGTACTGA AAGCCAGGGC GCTGACAAAG ACAAAACCCG TCTGGCGTTT
GCTGGTCTGA AATTCGCTGA CTACGGTTCT TTCGACTACG GTCGTAACTA CGGCGTTGCT
TACGACATCG GCGCATGGAC CGACGTTCTG CCAGAGTTCG GTGGCGATAC CTGGACTCAG
ACTGACGTCT TCATGACTGG CCGTACTACT GGTGTTGCCA CCTACCGTAA CACTGACTTC
TTTGGCCTGG TTGAAGGTCT GAACTTTGCC GCGCAGTACC AGGGCAAAAA CGACCGTGAC
GGCGCGTACG AGTCTAACGG CGACGGTTTC GGTCTGTCCG CAACGTATGA GTACGAAGGT
TTTGGCGTAG GTGCGGCCTA TGCGAAGTCT GACCGTACTA ACAACCAGGT GAAAGCAGCG
AGCAACCTGA ATGCTGCGGG TAAAAACGCT GAAGTCTGGG CTGCTGGTCT GAAATATGAT
GCGAACAACA TCTACCTGGC GACCACCTAC TCCGAAACGC TGAACATGAC CACCTTTGGT
GAAGATTCAG CGGGTGATGC GTTTATCGCG AATAAAACCC AGAACTTTGA AGCAGTTGCT
CAGTATCAGT TCGACTTCGG TCTGCGTCCG TCCATCGCTT ACCTGAAATC CAAAGGTAAA
AACCTGGGTA CTTACGGCGA CCAGGATCTG GTTGAGTACA TCGATGTCGG TGCTACCTAC
TACTTCAACA AAAACATGTC CACCTTCGTT GATTACAAAA TCAACCTGCT GGACGACAGC
GACTTCACCA AAGCGGCTAA AGTGTCTACC GACAACATCG TTGCTGTTGG TCTGAACTAC
CAGTTCTAA
 
Protein sequence
MKLKLVAVAV TSLLAAGVVN AAEVYNKDGN KLDLYGKVHA QHYFSDDNGS DGDKTYARLG 
FKGETQINDQ LTGFGQWEYE FKGNRTESQG ADKDKTRLAF AGLKFADYGS FDYGRNYGVA
YDIGAWTDVL PEFGGDTWTQ TDVFMTGRTT GVATYRNTDF FGLVEGLNFA AQYQGKNDRD
GAYESNGDGF GLSATYEYEG FGVGAAYAKS DRTNNQVKAA SNLNAAGKNA EVWAAGLKYD
ANNIYLATTY SETLNMTTFG EDSAGDAFIA NKTQNFEAVA QYQFDFGLRP SIAYLKSKGK
NLGTYGDQDL VEYIDVGATY YFNKNMSTFV DYKINLLDDS DFTKAAKVST DNIVAVGLNY
QF