| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1754 |
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| Symbol | |
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| ID | 6875292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 1692501 |
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| End bp | 1694666 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 642784891 |
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| Product | TonB-dependent receptor YncD |
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| Protein accession | YP_002215559 |
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| Protein GI | 198244055 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.460893 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 77 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACGTT TTCCGTTGAT ACGCTTACAT TTATCCGGCA TTTTCATGAA AATTATTTCC
GTTAGACAGC GACTTTATCC CGCCCTCTTA TTGCCTCTGA CCTTCTCCCC GGTCCTTCAG
GCCGCCAGCG CGTCCAATGA ACAAACCATG ATAGTCACCG CAACGCCGCA AACCGTATCC
GAACTGGATA CACCTGCCGC CGTTAGCGTC ATTGAGGGAG AAGACATGCG TCTGGCGACG
CCGCGCGTTA ATTTATCTGA GACTTTAACC AGCGTCCCGG GATTGCAGGT GCAGAACCGG
CAGAACTACG CGCAGGATCT GCAAATCTCT ATCCGTGGAT TTGGCTCGCG TTCCGCCTTT
GGCGTGCGCG GCATTCGTCT GTATGTTGAT GGCATTCCCG CCACCATGCC GGATGGACAA
GGCCAGATTT CGAATATTGA TATTAACAGC ATACAAGACG TTGAAGTGTT ACGCGGCCCC
TTCTCAGCGC TATACGGCAA TGCTTCCGGC GGCGTAATAA ATGTCACCAC CGAAACCGGG
AGACAGCCGC CCACCCTTGA GGCCAGCAGC TACTACGGCA GTTATGGAAG CTGGCGCTAT
GGGCTAAAAG CCACGGGCGC GATGGGTGAC GGCACACAGC CTGGCGACGT GGATTACACG
GTATCAACTA CCCGTTTCAC CACCCACGGC TACCGCGATC ACAGCGGCGC GCGAAAAAAT
CTGGCTAATG CCAAACTGGG CGTGCGCCTT GACGATGTCA GTAAACTTTC GCTGATTTTT
AATAGTGTGG ACATTAAGGC GGACGATCCC GGCGGACTTA CCGAATCTGA ATGGAAAGCC
GATCCGCAAC AGGCGCCGCG CGCTGAACAG TACAATACGC GTAAAACCAT CAAACAAACT
CAGGCAGGAT TGCGTTATGA ACGTCAGCTC AGCGCGCAGG ATGATATCAG CGTGATGGCC
TACGCCGGAG AGCGGGAAAC CACGCAATAC CAGTCTATTC CCCTGGTGGC ACAGCTAAAA
CCAGCCCAGG CTGGCGGCGT AATTACACTG CAACGCCACT ATCAGGGAAT TGATTCCCGC
TGGACTCACC GGGGAGAATT AGGTGTGCCG GTCACCTTCA CTGGCGGGTT AAACTATGAA
AACATGAGCG AAAACCGCAA GGGTTACAAT AATTTCCGTC TCAACAACGG CACCCCTGAG
TTCGGGCATA AAGGCGATTT ACGGCGGGAT GAGCGTAACC TGATGTGGAA TGTCGATCCT
TATCTGCAAA CCCAGTGGCA GCTTACGCAA AAACTCTCGC TGGATGCTGG CGTGCGCTAC
AGTTCCGTGT GGTTCGATTC TAACGATCAC TATATCGCGC CCGGCAATGG CGATGACAGC
GGCGACGCCA GCTATCACCA CTGGCTACCC GCCGGATCGC TAAAATATGC GTTAACTGAC
GCCTGGAATC TCTATCTTGC TGCCGGTCGC GGATTTGAAA CTCCCACTAT CAATGAACTT
TCTTATCGCG CTGACGGCCA AAGCGGGTTC AACTTTGACC TCAAACCGTC GACCAATGAT
ACGGTGGAAG TCGGCAGTAA AACGCGGATT GGCAATGGCT TGTTGACCGC CGCGTTATTT
CAAACCGATA CCGATGATGA AATTGTCGTC GCCAGTAGTA TGGGAGGACG CACTACCTAC
AAAAACGCGG GCAAAACGCG CCGCCAGGGC GCAGAGCTCG CGTTGGACCA GCGCTTCGCC
GGCGACTGGC GGGTGAAAGC ATCATGGACC TGGCTGGATG CGACCTATCG CAGTAACGTT
TGTCAGGGGC AAAACTGTGA TGGAAACCGG ATGCCCGGCA TCGCCCGTAA TATGGGATTC
GCCTCATTAG GTTTTATCCC GGATGAGGGG TGGTACGCCG GAACAGACGT TCGGTATATG
GGCGATATCA TGGCCAATGA TGAAAATACC GCCAAAGCGC CTTCGTATAC CGTTGTTGGA
CTAAATACAG GGTATAAATT TAATTACAGT CAGCTTACCG TCGATATTTT TGGGCGGGTA
GATAATCTAT TTGATAAAGA ATATATCGGT TCGGTGATCG TTAATGAATC TAATGGCCGA
TATTATGAGC CAGCGCCAGG GCGTAACTAT GGCGTGGGGA TTAATCTGGC ATGGCAATTT
GAATAA
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| Protein sequence | MSRFPLIRLH LSGIFMKIIS VRQRLYPALL LPLTFSPVLQ AASASNEQTM IVTATPQTVS
ELDTPAAVSV IEGEDMRLAT PRVNLSETLT SVPGLQVQNR QNYAQDLQIS IRGFGSRSAF
GVRGIRLYVD GIPATMPDGQ GQISNIDINS IQDVEVLRGP FSALYGNASG GVINVTTETG
RQPPTLEASS YYGSYGSWRY GLKATGAMGD GTQPGDVDYT VSTTRFTTHG YRDHSGARKN
LANAKLGVRL DDVSKLSLIF NSVDIKADDP GGLTESEWKA DPQQAPRAEQ YNTRKTIKQT
QAGLRYERQL SAQDDISVMA YAGERETTQY QSIPLVAQLK PAQAGGVITL QRHYQGIDSR
WTHRGELGVP VTFTGGLNYE NMSENRKGYN NFRLNNGTPE FGHKGDLRRD ERNLMWNVDP
YLQTQWQLTQ KLSLDAGVRY SSVWFDSNDH YIAPGNGDDS GDASYHHWLP AGSLKYALTD
AWNLYLAAGR GFETPTINEL SYRADGQSGF NFDLKPSTND TVEVGSKTRI GNGLLTAALF
QTDTDDEIVV ASSMGGRTTY KNAGKTRRQG AELALDQRFA GDWRVKASWT WLDATYRSNV
CQGQNCDGNR MPGIARNMGF ASLGFIPDEG WYAGTDVRYM GDIMANDENT AKAPSYTVVG
LNTGYKFNYS QLTVDIFGRV DNLFDKEYIG SVIVNESNGR YYEPAPGRNY GVGINLAWQF
E
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