Gene SeD_A1730 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1730 
Symbol 
ID6871563 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp1665624 
End bp1666742 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content56% 
IMG OID642784867 
Producthypothetical protein 
Protein accessionYP_002215535 
Protein GI198241807 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1363] Cellulase M and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.0782167 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones64 
Fosmid unclonability p-value0.771203 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTTTT CTGTGCAGGA AACGCTTTTT TCTTTACTGC GGCTAAACGG GATTTCAGGA 
CATGAAAGCA GTATTGCAAA CGTTATGCAG CACGCGTTTG AACAGCAGGC CAAAGACGTC 
TGGCGGGATC GCTTAGGCAA TGTCGTCGCC CGTTATGGCA GCGACAAATC CGACGCGCTT 
CGCCTGATGA TTTTTGCGCA TATGGATGAA GTCGGTTTTA TGGTACGCAA GATCGAACCC 
TCCGGCTTTT TACGTTTTGA ACGCGTGGGC GGCCCGGCGC AAATTACTAT GCCCGGTTCG 
GTCGTGACGC TTGCCGGACG TTCAGGCGAT ATCATGGGCT GTATCGGTAT TAAAGCATAT 
CACTTCGCGA AGGGTGACGA GCGCACCCAG CCTCCCGCGC TCGATAAACT CTGGATTGAT 
ATCGGCGCAA AAGATAAAGC GGATGCCGAA CGAATGGGTA TTCAGGTGGG GACGCCAGTA 
ACCCTTTACA ACCCGCCGCA CTGTCTGGGC AACGACCTGG TATGCAGTAA GGCGCTGGAT 
GACAGACTGG GGTGTACGGC GCTACTGGGC GTCGCCGAGG CTCTCGCCTC CACACCGCTC 
GATATCGCGG TGTTCCTGGT CGCGTCGGTA CAGGAAGAGT TCAATATTCG CGGGATTGTT 
CCCGTTTTAC GACGCGTGCG CCCCGACCTG GCGATTGGTA TTGATATCAC CCCATCCTGC 
GACACGCCTG ACCTGCAGGA TTACTCGGAT GTGCGGGTCA ACCACGGCGT CGGCATCACC 
TGTCTGAACT ATCACGGACG CGGTACGTTG GCGGGACTGA TTACGCCGCC GCGTTTGCTG 
CGGATGCTGG AGACCACCGC GCACGAAAAT AATATTCCCG TACAGCGAGA AGTCGCGCCA 
GGCGTCATCA CCGAAACCGG CTACATTCAG GTTGAACTGG ACGGTATTCC CTGCGCCAGT 
CTTTCTATTC CCTGCCGCTA TACCCACTCG CCAGCCGAAG TCGCCAGCCT GCGCGACCTG 
GCTGATTGTA TCCGTTTACT GACTGCGCTG GCCAACATGT CGCCAGAACA GTTTCCCATT 
GAGCCTGAAA CAGGCGCTAC ACAAGAGGCA CGACCATGA
 
Protein sequence
MTFSVQETLF SLLRLNGISG HESSIANVMQ HAFEQQAKDV WRDRLGNVVA RYGSDKSDAL 
RLMIFAHMDE VGFMVRKIEP SGFLRFERVG GPAQITMPGS VVTLAGRSGD IMGCIGIKAY 
HFAKGDERTQ PPALDKLWID IGAKDKADAE RMGIQVGTPV TLYNPPHCLG NDLVCSKALD 
DRLGCTALLG VAEALASTPL DIAVFLVASV QEEFNIRGIV PVLRRVRPDL AIGIDITPSC 
DTPDLQDYSD VRVNHGVGIT CLNYHGRGTL AGLITPPRLL RMLETTAHEN NIPVQREVAP 
GVITETGYIQ VELDGIPCAS LSIPCRYTHS PAEVASLRDL ADCIRLLTAL ANMSPEQFPI 
EPETGATQEA RP