Gene SeD_A1717 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1717 
Symbol 
ID6874158 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp1652788 
End bp1653711 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content54% 
IMG OID642784854 
ProductLysR substrate binding domain-containing protein 
Protein accessionYP_002215522 
Protein GI198245256 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value0.0492643 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAAAA ATGGTCTGTT TAGTCAGCGC ATTCGGTTGC GCCACCTTCA TACATTTGTA 
GCCGTTGCGC AACAGGGAAC TCTGGGGCGC GCGGCTGAAA CTCTTAACCT GAGCCAGCCA 
GCGCTTTCTA AAACGCTGAA CGAACTGGAA CAACTCACCG GAACCCGTCT GTTTGAACGC 
GGGCGACTGG GCGCGCAATT AACGGTTCCT GGCGAACAAT TTTTGACTCA TGCGGTAAAA 
GTATTAGATG CATTGAATAC CGCCGGGCAG GCGCTGAATC GCAAAGAGGA CGCCAGCGCC 
GATGTGGTGC GTGTTGGCGC GCTCCCCACC GCTGCGCTGG GTATACTCCC GGCGGCTATT 
GGGCGGTTCC ATCAACAGCA AAAATCGACC TCGTTACAGG TCGCGACCAT GAACAATACG 
ATGTTGCTTG CAGGTCTGAA ATCAGGCGAG ATCGATCTGG GTATTGGCCG CATGTCAGAC 
CCGGAATTAA TGGGCGGTTT AAATTACGAA CTGCTGTTTT TAGAATCGCT TAAATTAGTG 
GTACGCCCCG GTCATCCCCT GTTACAGGAG ACGATCACGC TCAGTCGGGT TATGGAGTGG 
CCGGTAGTCG TCTCGCCAAA AGGCACGGTA CCGCGCCAGA ATGCGGAAGC CCTGTTGCAA 
AGCCAGGGGT GTAAAATGCC TGCCGGATGT ATCGAAACGC TATCCGCATC GTTATCACGA 
CAACTGACCG TAGATTACGA TTACGTCTGG TTCGTCCCCT CTGGCGCGGT TAAAGAAGAT 
CTTCGCCAGG CGACGCTGGT CTCATTACCC GTGCCGACCC AGAGCGCAGG CGAACCGATA 
GGTATTCTTA CGCGAGTTGA TATCCCGCTC TCAACCGGGG CGCAAATGCT GATTGCGGCG 
ATCCGTAAAT CGATGCCGCT GTGA
 
Protein sequence
MEKNGLFSQR IRLRHLHTFV AVAQQGTLGR AAETLNLSQP ALSKTLNELE QLTGTRLFER 
GRLGAQLTVP GEQFLTHAVK VLDALNTAGQ ALNRKEDASA DVVRVGALPT AALGILPAAI 
GRFHQQQKST SLQVATMNNT MLLAGLKSGE IDLGIGRMSD PELMGGLNYE LLFLESLKLV 
VRPGHPLLQE TITLSRVMEW PVVVSPKGTV PRQNAEALLQ SQGCKMPAGC IETLSASLSR 
QLTVDYDYVW FVPSGAVKED LRQATLVSLP VPTQSAGEPI GILTRVDIPL STGAQMLIAA 
IRKSMPL