Gene SeD_A1661 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1661 
Symbol 
ID6874599 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp1603355 
End bp1604206 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content39% 
IMG OID642784805 
Productputative regulatory protein 
Protein accessionYP_002215473 
Protein GI198245872 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value0.0701683 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAG CCATAATAAT CTCAGTATTA GAGCAAATAG AAAAAAATCT TGAAGAGAGG 
ATTGATATTG AAAAGCTGGT TGTTATAACA GGTTATTCGC GAAGGAGTTT GCAGGATTTT 
TTTAAAGAAA AGTGTGGCGT CTCAATCGGA AAATATATCA GACAACGCAA GTTGAGCAGA 
AGCGCCACTC TGCTAAAGCT GACCTCTCAG TCGGTCACAG ATATCGCGTT CAGAATGGGG 
TTTGATTCAG TGCAGTCCTA TAGTCGAGAG TTCAAAAAAA CATTTGGCGT CAATCCCAAT 
AACTATCGCA AGGCTGATTT CTGGGATCTC AGAAACCTAC GGCTTCCCTA CTGGCTTGAC 
TGTGATGAGC ATTATCAGTT CGAAATTTGT CAGCTTACGT CAAAAGAAAT TTTCGGATTT 
CAAACGTCTC ATCAGATCGC AACAAATGAC CTTCCTAAAA AAGCGTCGCC TATAAAATGG 
AAAATCATTC ATGAGACGCT CAGAACGTGG GGCGAAAATG TGTATTGTCT CTCGTCTTTT 
AAGCCGGATA ATACCAAAGA CCAGGTCATC GCCGTAAGCA GTTTTTTTGG TATGGAACAT 
AATTCCGTCG ATGGAGGCAA AATACCCATG TCGAGGGTAA TAAAATGTGG TAAATATGCA 
AAATTCCATT TCGTTGGTCA TAAAGAACAA TATCAACAAT TTACCAATAC AATATATATG 
TGTATATTGC CAAAACTGAA TCTTATCAGG AGAGAAGGAG AAGATATTGA ATACTTCCAT 
TTGGCATCCG TCCAAAAGCA ACAGAGTAAT GAATCCATTG TCGATCTTTA TTATTACATC 
CCTGTACTGT AA
 
Protein sequence
MKKAIIISVL EQIEKNLEER IDIEKLVVIT GYSRRSLQDF FKEKCGVSIG KYIRQRKLSR 
SATLLKLTSQ SVTDIAFRMG FDSVQSYSRE FKKTFGVNPN NYRKADFWDL RNLRLPYWLD 
CDEHYQFEIC QLTSKEIFGF QTSHQIATND LPKKASPIKW KIIHETLRTW GENVYCLSSF 
KPDNTKDQVI AVSSFFGMEH NSVDGGKIPM SRVIKCGKYA KFHFVGHKEQ YQQFTNTIYM 
CILPKLNLIR REGEDIEYFH LASVQKQQSN ESIVDLYYYI PVL