Gene SeD_A1651 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1651 
Symbol 
ID6875294 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1593137 
End bp1594102 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content58% 
IMG OID642784795 
Productmandelate racemase / muconate lactonizing enzyme, N- domain-containing protein 
Protein accessionYP_002215463 
Protein GI198244730 
COG category[M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only 
COG ID[COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.0400124 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value0.00630441 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGATCTG TTAAGGTATA TGAGGAAACC TGGCCGTTAC ATACGCCTTT TGTTATTGCG 
CGTGGTAGCC GAAGCGAAGC GCATGTTGTC GTTGTCGAAC TGGAAGAAGA GGGCGTAAAA 
GGCATCGGGG AATGTACGCC ATATCCACGT TATGGTGAAA GTGATGCCTC GGTCATGGCG 
CAAATCATGA GTATTGTGCC TCAGTTGGAA AACGGGCTGA CTCGCGAAGC ATTGCAGAAA 
CTGTTGCCGG CAGGCGCGGC GCGCAACGCG GTGGATAGCG CCTTATGGGA TTTGCAGGCC 
CGCCAGCAGC AGCAAAGCCT TGCCGGGCTG CTCGGCGTGA CGCTGGCCCC GGTTTTTACT 
ACCGCGCAAA CGGTAGTGAT AGGCACGCCG GAACAGATGG CAGCCAGTGC GGCGGCACTA 
TGGGAAAAAG GGGCGACGTT GCTGAAAATT AAACTCGATG CTCGTCTGAT TAGCGAACGT 
ATGGTGGCGA TCCGCTCGGC GGTGCCGGAG GCGACGCTCA TTGTGGACGC CAATGAATCG 
TGGCGTCCGG AGGGGCTGGC GGCGCGTTGC CAGTTACTGG CGGATCTGAA TGTCGCGATG 
CTGGAGCAAC CGCTGCCCGC GCAGGATGAC GCCGCCCTGG AAAATTTTAT TCATCCGTTG 
CCCATCTGTG CAGATGAGAG CTGCCATACT CGCAGTAGTC TGAAAGCCCT GACGGGGCGC 
TACGATATGA TCAACATTAA GCTGGATAAA ACCGGCGGTC TGACTGAGGC GCTGGCGCTG 
GCAACGGAGG CGCGGGAGCA AGGATTCGGC CTGATGCTGG GCTGTATGCT CTGTACATCA 
AGAGCGATTA GCGCCGCGCT GCCGCTTATG CCGCAGGTGA GCTTCGCCGA TCTTGATGGC 
CCAACATGGC TGGCGGTTGA TGTTGAGCCC GCGCTACGCT TTACGACGGG TCAACTCCAT 
CTTTAG
 
Protein sequence
MRSVKVYEET WPLHTPFVIA RGSRSEAHVV VVELEEEGVK GIGECTPYPR YGESDASVMA 
QIMSIVPQLE NGLTREALQK LLPAGAARNA VDSALWDLQA RQQQQSLAGL LGVTLAPVFT 
TAQTVVIGTP EQMAASAAAL WEKGATLLKI KLDARLISER MVAIRSAVPE ATLIVDANES 
WRPEGLAARC QLLADLNVAM LEQPLPAQDD AALENFIHPL PICADESCHT RSSLKALTGR 
YDMINIKLDK TGGLTEALAL ATEAREQGFG LMLGCMLCTS RAISAALPLM PQVSFADLDG 
PTWLAVDVEP ALRFTTGQLH L