Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1649 |
Symbol | |
ID | 6871522 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 1590884 |
End bp | 1592425 |
Gene Length | 1542 bp |
Protein Length | 513 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642784793 |
Product | DNA-binding transcriptional regulator TyrR |
Protein accession | YP_002215461 |
Protein GI | 198241946 |
COG category | [E] Amino acid transport and metabolism [K] Transcription |
COG ID | [COG3283] Transcriptional regulator of aromatic amino acids metabolism |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.727425 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 0.000895346 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGTCTGG AAGTCTTTTG TGAAGACCGA CTTGGTCTGA CCCGCGAATT ACTTGATTTA CTGGTGTTAC GTAGCATTGA TTTACGCGGA ATCGAGATTG ATCCCATTGG GCGAATTTAT CTTAATTTTG CTGAGCTGGA ATTCACCGAC TTTAGCAGCC TGATGGCAGA AATCCGCCGT ATTTCCGGCG TAACGGATGT CCGTACCGTT CCCTGGATGC CGTCCGAACG TGAACATCTG GCCCTGAGCG CGCTGCTTGA GGCGTTGCCG GAGCCGGTGC TCTCATTGGA TATGAAGAGT AAAGTGGAGA TGGCGAACCC GGCGAGTTGT CAACTTTTTG CCCAGAGCCA GGAGCGAATG CGGCACCATA CCGCCGCACA ATTAATCAAC GGCTTCAATT TTCAGCGCTG GCTGGACGGT AACCCGCAAA GCTCCCATAA CGAACATGTC GTGATCAACG GGCAAAACTT CCTGATGGAG ATTACGCCGG TACATTTACA AAACGAAAAT GACGAATACG TGTTGACCGG GGCGGTCGTG ATGTTGCGTT CCACGATTCG TATGGGGCAG CAGCTACAGA ATTTGTCCAC GCAGGATCTG AGCGCGTTTA GTCAGATTAT TGCCGTGAGC GCAAAGATGA AGCACGTCGT TGAGCAGGCG CGCAAACTGG CGATGCTCAG CGCGCCGCTG CTGATTACCG GCGATACGGG AACCGGCAAA GATCTTTTCG CCTATGCCTG TCATCAGGCA AGCCCTCGTT CAGCGAAGCC GTATCTGGCG CTCAACTGCG CTTCAATCCC GGAAGATGCG GTAGAAAGCG AACTATTTGG CCATGCGCCG GAAGGTAAAA AAGGCTTTTT TGAACAGGCG AATGGCGGTT CGGTGCTGCT GGATGAAATT GGCGAAATGT CGCCGCGTAT GCAGGCGAAG CTGCTGCGTT TTCTCAACGA TGGTACGTTC CGTCGCGTCG GCGAAGATCA CGAAATTCAT GTTGATGTCC GCGTTATCTG CGCCACGCAG AAAAATCTGG TGGAGCTGGT GCAAAAAGGA CTGTTCCGCG AAGATCTCTA TTATCGACTT AACGTTCTGA CGCTTAATTT GCCGCCGTTG CGCGATTGCC CGCAGGATAT TATGCCGTTG GCCGAACTAT TCGTGGCGCG TTTTGCCGAC GAACAGGGCG TTCCGCGACC GAAACTGTCT GCCGATCTGA GTACGGTCCT CACTCGTTAC GGCTGGCCGG GTAACGTTCG CCAGCTTAAA AATGCGATTT ACCGGGCGCT GACGCAACTG GAAGGGTATG AGCTGCGTCC GCAGGATATC CTGCTGCCTG ACTACGATGC CGCGACGGTG GCAGTCGGCG AGGATGCGAT GGAAGGCTCG CTGGATGACA TTACCAGTCG TTTTGAACGT TCTGTCCTGA CCCAGCTTTA TCGTAGCTAT CCGAGTACGC GTAAACTGGC GAAACGGTTG GGGGTATCGC ATACCGCGAT TGCCAATAAG CTGCGTGAAT ATGGTCTGAG CCAGAAGAAG GGTGAAGAGT AG
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Protein sequence | MRLEVFCEDR LGLTRELLDL LVLRSIDLRG IEIDPIGRIY LNFAELEFTD FSSLMAEIRR ISGVTDVRTV PWMPSEREHL ALSALLEALP EPVLSLDMKS KVEMANPASC QLFAQSQERM RHHTAAQLIN GFNFQRWLDG NPQSSHNEHV VINGQNFLME ITPVHLQNEN DEYVLTGAVV MLRSTIRMGQ QLQNLSTQDL SAFSQIIAVS AKMKHVVEQA RKLAMLSAPL LITGDTGTGK DLFAYACHQA SPRSAKPYLA LNCASIPEDA VESELFGHAP EGKKGFFEQA NGGSVLLDEI GEMSPRMQAK LLRFLNDGTF RRVGEDHEIH VDVRVICATQ KNLVELVQKG LFREDLYYRL NVLTLNLPPL RDCPQDIMPL AELFVARFAD EQGVPRPKLS ADLSTVLTRY GWPGNVRQLK NAIYRALTQL EGYELRPQDI LLPDYDAATV AVGEDAMEGS LDDITSRFER SVLTQLYRSY PSTRKLAKRL GVSHTAIANK LREYGLSQKK GEE
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