| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1629 |
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| Symbol | |
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| ID | 6871947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 1570083 |
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| End bp | 1572074 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642784774 |
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| Product | RNase II stability modulator |
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| Protein accession | YP_002215442 |
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| Protein GI | 198242265 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0924134 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 2.42351e-16 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTACGCA TGATGAAACA GATTCAGGAA CAAACGGCGC TAAATCCCCT TCACTCTCAC
TGGCGTCTGG CTGATGACCG CAACGTGCTG TATCTCTCCC CGACAGGTGA AACGGATACA
GAAAAAACGG TCGAGCTATC GCCGGAGCAA GCCGGGCGTA TCCGGGAAAT AACGGCGATT
ACGTCCAGTC TGCTGATAAC GTTGTTGATA GAAAAACAGG TTACCGCTGT GCACCTGGTA
GGCCGTAAGA TTAATAACCG TGAATGGGCT GGCAGCCTGG CAACCTGGCC TGATACGCCT
GCCGTCGCGC CAACGCAGGC GCAGGAGCTC TCTTTTGCCG AGCAAATCGT ATCAGAAGCC
AACTCAGTCA TTGCGATACT GGATAGTCGG GGAAAAATCT GTCGATTTAA TCGGTTATGC
GAAGAGTACA CGGGCTTAAA AGAGCGAGAT GTAATTGGTC AAAGCGTCTT TAAATTATTT
ATGAGTCGCC GGGAGGCGGT TGCCTCCCGG CACTACATTG AGAATTTTTT TCGCAATGGC
AATGCCTATG AAATCGAACG CTGGATAAAG ACCCGTAAAG GCCAACGCCT GTTCTTATTT
CGTAATAAAT TTGTCCATAA CGGTAGCGGA AAAAACGAAA TTTTCCTGAT CTGCGCAGGC
ACGGATATCA CCGAAGAAAG GCGGGCTCAG GAGCGTTTAC GCATACTGGC GAATACAGAC
ACCGTCACCG GCCTGCCCAA TCGCAATGCT ATCCATGAAT TTATTAATCA TGCTATTGCC
TCGGCTGGCG AGTCGCAAGT GGGTATCGTT TATCTCGATC TGGATAACTT CAAGAAAATT
AATGACGCCT ATGGGCATAT GTTTGGCGAT CAGCTCTTAC AGGCCGTTTC GCTGGCGCTG
TTGAGTTGTC TGGAGGAAGA TCAATTGCTG GCCAGACTGG GGGGAGATGA ATTCATTGTC
CTCGCTGCCC ATACGTCTCA GGCCGCGCTG GAAGCAGTAG CCTCACGAAT CCTTACCCGT
CTGCGGCAAC CGTTTCGTAT TGGACTCATT GAAGTTTACA CGGGATGCGC CATTGGCATT
TCGTTGGCCC CCCGGCACGG ACAGGACAGC GACAGTCTCA TTCGCACTGC CGACACCGCA
ATGTATAACG CCAAAGAAGG CGGCCGCGGT CAGTTCTGCG TTTTTTCGCC GGAAATGAAT
CAGCGCGTAT TTGACTATCA CTGGCTGGAT ACAAACCTGC GAAAAGCGCT GGAAAACGAC
CAGTTACTTA TTCACTATCA GCCCAAAATT ACCTGGCGCG GCGAAGTACG TAGCCTGGAA
GCGCTGGTAC GCTGGCAATC GCCGGAACGC GGATTAATTC CGCCGCTGGA GTTCATCTCA
TACGCCGAAG AGTCAGGACT CATCGTCCCG CTGGGCCGCT GGGTGATTCT GGATGTGGTT
CGCCAGATTG CGAGATGGCG CGATAAGGGG ATTAACTTGC GCGTAGCCGT TAACTTTTCG
GCGCGACAAC TGGCCGACCA GACGCTTTTT ACTGCGCTTA AACAGGCTTT GTACGATCTG
AATTTTGAGT ATTGCCCGAT CGATGTCGAG CTAACGGAAA GCTGCCTGAT CGAAAACGAC
ACGCTGGCGC TATCGGTTAT CCAGCAATTT AGTCAGCTCG GCGCCCAGAT TCATCTGGAT
GATTTTGGCA CCGGGTATTC TTCGCTTTCT CAACTCGCCC GGTTCCCTAT TGATGCCGTT
AAACTGGATC AGGCTTTCGT CAGAGATATC CATAAGCAAC CGCTGTCGCA ATCTCTGGTT
CGGGCGATTG TCGCGGTGGC TCAGGCGCTA AATTTACAAG TGATTGCCGA AGGCGTAGAA
AATGCTAAAG AAGATGCCTT CCTGACAAAA AACGGCGTCA ATGAACGACA GGGCTTTTTA
TTCGCCAAAC CTATGCCCGC CGTTTCTTTT GAACGCTGGT ACAAACGTTA TCAGACGAAA
AAAATGCGTT AA
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| Protein sequence | MVRMMKQIQE QTALNPLHSH WRLADDRNVL YLSPTGETDT EKTVELSPEQ AGRIREITAI
TSSLLITLLI EKQVTAVHLV GRKINNREWA GSLATWPDTP AVAPTQAQEL SFAEQIVSEA
NSVIAILDSR GKICRFNRLC EEYTGLKERD VIGQSVFKLF MSRREAVASR HYIENFFRNG
NAYEIERWIK TRKGQRLFLF RNKFVHNGSG KNEIFLICAG TDITEERRAQ ERLRILANTD
TVTGLPNRNA IHEFINHAIA SAGESQVGIV YLDLDNFKKI NDAYGHMFGD QLLQAVSLAL
LSCLEEDQLL ARLGGDEFIV LAAHTSQAAL EAVASRILTR LRQPFRIGLI EVYTGCAIGI
SLAPRHGQDS DSLIRTADTA MYNAKEGGRG QFCVFSPEMN QRVFDYHWLD TNLRKALEND
QLLIHYQPKI TWRGEVRSLE ALVRWQSPER GLIPPLEFIS YAEESGLIVP LGRWVILDVV
RQIARWRDKG INLRVAVNFS ARQLADQTLF TALKQALYDL NFEYCPIDVE LTESCLIEND
TLALSVIQQF SQLGAQIHLD DFGTGYSSLS QLARFPIDAV KLDQAFVRDI HKQPLSQSLV
RAIVAVAQAL NLQVIAEGVE NAKEDAFLTK NGVNERQGFL FAKPMPAVSF ERWYKRYQTK
KMR
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