| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1614 |
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| Symbol | topA |
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| ID | 6872290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 1556218 |
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| End bp | 1558815 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642784759 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_002215427 |
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| Protein GI | 198243642 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.848842 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.000000000000466003 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGTAAAG CTCTTGTCAT CGTTGAGTCC CCGGCAAAAG CCAAAACGAT CAACAAGTAT
CTGGGTAATG ACTACGTGGT GAAATCCAGC GTGGGTCATA TCCGTGATTT GCCGACCAGT
GGCTCAGCAG CTAAAAAGAG CGCCGACTCT ACCTCCACCA AAACGGCTAA AAAGCCCAAA
AAGGATGAAC GTGGCGCTCT CGTCAACCGT ATGGGGGTTG ACCCGTGGCA CAACTGGGAT
GCGCACTATG AAGTGCTGCC CGGTAAAGAG AAGGTCGTCT CTGAACTGAA ACAGTTGGCG
GAAAAAGCCG ACCACATCTA TCTCGCAACC GACCTTGACC GCGAAGGGGA AGCCATTGCA
TGGCACCTGC GGGAAGTGAT CGGCGGCGAT GACGCGCGCT ACAGTCGCGT AGTCTTTAAC
GAAATAACCA AAAATGCCAT TCGCCAGGCG TTTGAACAGC CGGGCGAGCT GAACATTAAC
AGGGTCAACG CCCAGCAAGC GCGCCGCTTT ATGGATCGCG TGGTAGGCTA TATGGTCTCG
CCGCTGCTGT GGAAAAAGAT CGCCCGTGGT TTGTCGGCAG GTCGCGTTCA GTCTGTCGCG
GTCCGTCTGG TCGTTGAACG CGAGCGCGAG ATTAAAGCGT TTGTTCCGGA AGAGTTCTGG
GAAATTGACG CTAATACGAC GACGCCGTCT GGCGAGGCGC TACCGCTACA GGTCACGCAT
CAGAACGACA AGCCATTCCG GCCGGTAAAT CGCGAGCAGA CGCTTGCTGC GGTGAGCCTG
CTGGAAAAAG CCAGCTATAG CGTGCTGGAG CGAGAAGACA AGCCGACCAG CAGCAAGCCA
GGCGCGCCGT TTATCACCTC CACGCTACAA CAGGCGGCCA GCACCCGGCT GGGCTTTGGC
GTGAAGAAAA CCATGATGAT GGCGCAGCGT CTGTATGAGG CGGGCTACAT CACCTATATG
CGTACAGACT CCACCAACCT GAGTCAGGAT GCGGTCAACA TGGTGCGCGG CTATATTGGC
GATAATTTCG GCAAGAAATA CCTGCCGGAT AACCCGAACC AGTACGCCAG CAAAGAAAAC
TCTCAGGAAG CGCACGAAGC GATCCGTCCT TCCGACGTTG CGGTCATGGC GGAGTCGCTG
AAAGACATGG AGGCTGACGC GCAGAAGTTG TATCAGCTAA TTTGGCGTCA GTTTGTCGCC
TGTCAGATGA CGCCAGCACA ATATGACTCC ACTACGCTTA CCGTTGGTGC AGGCGAGTTC
CGTCTGAAAG CGCGTGGGCG TATTTTGCGC TTTGACGGCT GGACAAAAGT GATGCCGGCG
CTGCGTAAAG GCGATGAAGA TCGCACATTG CCTGCCGTGA ATAAGGGCGA TGCGCTGACG
CTACTTGAAT TGACGCCTGC TCAGCACTTT ACTAAACCGC CAGCCCGTTT CAGCGAGGCT
TCTCTGGTTA AAGAGCTTGA GAAGCGCGGT ATTGGTCGTC CGTCTACCTA TGCGTCGATT
ATCTCGACCA TTCAGGATCG CGGCTATGTT CGCGTTGAAA ACCGTCGCTT CTATGCGGAA
AAAATGGGTG AAATCGTCAC CGATCGGCTG GAAGAAAACT TCCGCGAATT GATGAACTAC
GATTTTACTG CGCAGATGGA AGATAGTCTG GATCAGGTTG CGAATCACCA GGCCGAGTGG
AAAGCGGTAC TGGATAACTT CTTCAGCGAT TTTACTCAGC AGCTCGATAA AGCCGAGAAA
GATCCGGAAG AAGGGGGGAT GCGTCCTAAC CAGATGGTGC TGACCAGCAT CGACTGTCCA
ACCTGTGGCC GTAAAATGGG AATTCGTACT GCCAGTACGG GCGTTTTCCT TGGATGTTCA
GGTTATGCGC TTTCGCCGAA AGAGCGTTGT AAAACGACCA TTAACCTGGT GCCGGAAAAT
GAAGTTCTGA ACGTGCTGGA AGGCGACGAC GCCGAAACCA ACGCCCTGCG CGCCAAGCGT
CGCTGCCAGA AGTGCGGTAC GGCGATGGAC AGCTATCTGA TCGATCCGAA GCGTAAATTG
CATGTGTGTG GTAATAACCC GACCTGTGAC GGCTACGAGA TTGAAGAAGG CGAGTTCCGC
ATCAAAGGGT ATGACGGCCC GATCGTTGAG TGTGAGAAAT GTGGTTCCGA AATGCACCTT
AAAATGGGGC GTTTTGGTAA GTACATGGCC TGTACTAACG ACGAATGTAA AAATACCCGT
AAGATCTTGC GTAACGGCGA AGTTGCGCCG CCGAAGGAAG ATCCTGTTCC ATTACCGGAA
CTGCCGTGTG AAAAATCGGA CGCGTACTTT GTGCTGCGCG ATGGCGCCGC AGGGATATTC
CTGGCGGCCA ATACGTTCCC GAAATCACGC GAAACGCGCG CGCCATTAGT CGAGGAGCTT
TACCGGTTCC GCGATCGCCT GCCGGAAAAA CTGCGGTATC TGGCGGATGC GCCGCAGCAG
GATCCGGAAG GTAATAAAAC CGTTGTTCGC TTTAGCCGCA AAACAAAACA GCAGTACGTT
GCGGCGGAAA AAGACGGGAA GGCGACGGGA TGGTCAGCGT TCTTCGTCGA CGGCAAGTGG
GTTGAAGGTA AGAAATAA
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| Protein sequence | MGKALVIVES PAKAKTINKY LGNDYVVKSS VGHIRDLPTS GSAAKKSADS TSTKTAKKPK
KDERGALVNR MGVDPWHNWD AHYEVLPGKE KVVSELKQLA EKADHIYLAT DLDREGEAIA
WHLREVIGGD DARYSRVVFN EITKNAIRQA FEQPGELNIN RVNAQQARRF MDRVVGYMVS
PLLWKKIARG LSAGRVQSVA VRLVVERERE IKAFVPEEFW EIDANTTTPS GEALPLQVTH
QNDKPFRPVN REQTLAAVSL LEKASYSVLE REDKPTSSKP GAPFITSTLQ QAASTRLGFG
VKKTMMMAQR LYEAGYITYM RTDSTNLSQD AVNMVRGYIG DNFGKKYLPD NPNQYASKEN
SQEAHEAIRP SDVAVMAESL KDMEADAQKL YQLIWRQFVA CQMTPAQYDS TTLTVGAGEF
RLKARGRILR FDGWTKVMPA LRKGDEDRTL PAVNKGDALT LLELTPAQHF TKPPARFSEA
SLVKELEKRG IGRPSTYASI ISTIQDRGYV RVENRRFYAE KMGEIVTDRL EENFRELMNY
DFTAQMEDSL DQVANHQAEW KAVLDNFFSD FTQQLDKAEK DPEEGGMRPN QMVLTSIDCP
TCGRKMGIRT ASTGVFLGCS GYALSPKERC KTTINLVPEN EVLNVLEGDD AETNALRAKR
RCQKCGTAMD SYLIDPKRKL HVCGNNPTCD GYEIEEGEFR IKGYDGPIVE CEKCGSEMHL
KMGRFGKYMA CTNDECKNTR KILRNGEVAP PKEDPVPLPE LPCEKSDAYF VLRDGAAGIF
LAANTFPKSR ETRAPLVEEL YRFRDRLPEK LRYLADAPQQ DPEGNKTVVR FSRKTKQQYV
AAEKDGKATG WSAFFVDGKW VEGKK
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