Gene SeD_A1585 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1585 
SymboloppF 
ID6872116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1531980 
End bp1532984 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content54% 
IMG OID642784732 
Productoligopeptide ABC transporter ATP-binding protein OppF 
Protein accessionYP_002215400 
Protein GI198243369 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones69 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGCTG TGATTGAACA ACGTAAAGTT CTCCTCGAAA TCGCCGATCT GAAAGTACAT 
TTTGATATCA AAGAAGGGAA GCAGTGGTTC TGGCAACCGC CGAAAACTCT GAAAGCGGTG
GACGGCGTTA CGCTACGCCT GTATGAAGGC GAAACGCTTG GCGTGGTGGG TGAATCCGGC
TGCGGCAAGT CGACGTTTGC GCGCGCCATT ATTGGTCTGG TGAAGGCGAC AGACGGTAAA
GTCGCCTGGC TGGGAAAAGA TCTGTTGGGC ATGAAAGCGG ATGAGTGGCG CGAAGTGCGC
AGCGATATCC AGATGATTTT CCAGGACCCG CTGGCGTCAC TCAACCCGCG AATGACGATT
GGCGAAATTA TCGCGGAACC GCTGCGCACT TATCATCCTA AACTTTCGCG CCAGGACGTG
CGTGACCGCG TGAAAGCCAT GATGCTGAAA GTGGGGCTGC TGCCGAATCT CATCAACCGT
TATCCTCATG AATTTTCCGG GGGGCAGTGC CAGCGCATCG GTATCGCCCG GGCGTTGATC
CTGGAACCTA AGCTCATTAT TTGCGATGAG CCGGTGTCGG CGCTGGACGT TTCTATTCAG
GCGCAGGTGG TGAATTTGCT CCAGCAGTTA CAGCGAGAGA TGGGGCTGTC GTTGATTTTT
ATTGCGCACG ACCTGGCGGT CGTAAAGCAC ATATCCGATC GTGTCCTGGT GATGTATCTC
GGTCATGCAG TAGAATTGGG CACCTATGAT GAGGTGTACC ATAATCCACT GCATCCTTAT
ACCAAAGCGC TGATGTCGGC GGTACCGATT CCCGATCCCG ATCTGGAGCG AAATAAGAAG
ATACAATTGC TGGAGGGCGA ATTACCTTCG CCCATTAACC CGCCTTCCGG CTGCGTGTTC
CGTACACGCT GTCCGCTAGC CGGGCCAGAA TGCGCGCAAA CGCGACCGGT GCTGGAAGGA
AGTTTTCGCC ATGCCGTTTC CTGCCTTAAA GTAGACCCGT TATAA
 
Protein sequence
MNAVIEQRKV LLEIADLKVH FDIKEGKQWF WQPPKTLKAV DGVTLRLYEG ETLGVVGESG 
CGKSTFARAI IGLVKATDGK VAWLGKDLLG MKADEWREVR SDIQMIFQDP LASLNPRMTI
GEIIAEPLRT YHPKLSRQDV RDRVKAMMLK VGLLPNLINR YPHEFSGGQC QRIGIARALI
LEPKLIICDE PVSALDVSIQ AQVVNLLQQL QREMGLSLIF IAHDLAVVKH ISDRVLVMYL
GHAVELGTYD EVYHNPLHPY TKALMSAVPI PDPDLERNKK IQLLEGELPS PINPPSGCVF
RTRCPLAGPE CAQTRPVLEG SFRHAVSCLK VDPL