| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1557 |
|---|
| Symbol | |
|---|
| ID | 6874721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 1502496 |
|---|
| End bp | 1504292 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642784709 |
|---|
| Product | nitrate/nitrite sensor protein NarX |
|---|
| Protein accession | YP_002215379 |
|---|
| Protein GI | 198244934 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3850] Signal transduction histidine kinase, nitrate/nitrite-specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 0.0417714 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAAC GGTGCTTCTC TCCTCTTACG CTGGTTAACC AACTGGCGCT GATTGTCATG
CTCTCTACCG CTATCGGCGT GGCGGGGATG GCGGTTTCCG GCTGGCTGGT TCAGGGCGTG
CAGGGTAGCG CTCATGCGAT TAATAAAGCG GGCTCATTGC GTATGCAAAG CTATCGACTA
CTGGCCGCTG TCCCGCTGGA TGCTAAAGAT CAAAAGCTGC TGGATGAGAT GGAGCAAACG
GCATTCAGCC CGGAACTGAC CCGCGCCGCT GAGCGAGACG GGCAGCAAAA GCAGCTTAAA
GCGTTGCAGG ATTACTGGCA TAACGAACTC TCGCCAGGGC TACAGCACGC GCAAAACGCG
CACGCGGTCG CAGAAGATGT CACGCGCTTT GTGGCGGGCC TGGATCGCCT GGTGACGTCG
TTCGACCATA CTACTGAATT GCGTATCGAA CGCGTGGTAT TAGTTCACCG GGTAATGGCG
ATCTTTATGG CGCTATTGCT GGTATTTACG ATTATCTGGC TACGTGTTCG CCTTTTGCAG
CCCTGGAAAC AGTTGTTATC AATGGCGCGC GCCGTCAGTC AGCGCGACTT TACCCAACGT
GCCAATATCA GTGGACGCAA TGAGATGGCC GCGTTGGGTT CTGCGCTCAA TAATATGTCT
GAAGAACTGG CCGAAAGTTA TGCGGTACTG GAACAGCGCG TACAGGAAAA AACAGCCGGT
CTGGAACATA AAAACCAGAT TCTCTCGTTT TTGTGGCAAG CCAACCGCCG ACTGCATTCA
CAGGCTCCGC TATGTGAGCG TCTTTCTCCG GTACTGAATG GCCTGCAAAA TTTAACCCAG
TTGCATGATA TTGAGCTGCG AGTCTATGAC CTGGAAGATG AAGATAATCA CCAGGAATTT
ACCTGTCAGT CGGACATCAG TTGCGATGAT AAAGGCTGCC ACCTTTGCCC ACGTAGCGCC
CTGCCGATGA TTAACGGCGG CACCACCTTA AAATGGCGGC TCACCGACTC TCACACCCAA
TACGGTATTT TGCTGGCGAC GCTGCCCTAT GGACGCCATC TCAGCCACGA TCAGCAACAG
TTGGTGGACA CGCTGGTTGA ACAGCTTACC GCGACTCTGG CGCTCGACAG GCATCAGGAG
CGCCAGCAGC AGTTGATTGT CATGGAAGAG CGTGCCACCA TTGCCCGCGA ACTGCATGAT
TCTATTGCCC AGTCGCTCTC TTGTATGAAG ATGCAGGTGA GCTGCCTGCA AATGCAGGGC
GACGTGTTAC CGGAAAGCAG CCGTGAGTTA CTCAGCCAAA TTCGCAATGA GCTGAACTGC
TCCTGGGCGC AACTGCGCGA ACTGTTAACC ACTTTCCGCT TACAGTTGAC GGAACCCGGG
CTACGTCCGG CGCTGGAAGC AAGCTGCCAG GAGTTCAGCG CCCGGTTTGG CTTTACGGTA
AAACTGGATT ATCAGCTTCC CCCCCGCCTG GTGCCTTCAC ACCAGGCGAT ACACCTGTTG
CAAATTGCCA GGGAAGCCCT CAGCAACGCC CTTAAACACT CTCATGCCGA CGATGTGGTG
GTGACAGTGA CGCAATGTGG CAAACAGGTC AAACTAAAAG TACAGGATAA TGGCTGCGGC
GTCCCGGAAA ACGCCGAACG CAGTAATCAC TACGGCATGA TTATCATGCG CGATCGGGCG
CAAAGTTTGC GCGGCGATTG CCAGGTACGC CGACGCGAGA CTGGCGGAAC AGAGGTCACT
GTTACTTTTA TTCCAGAAAC AAACTTCACA GAAACCCAGG GAGATACCCA TGAATAA
|
|---|
| Protein sequence | MFKRCFSPLT LVNQLALIVM LSTAIGVAGM AVSGWLVQGV QGSAHAINKA GSLRMQSYRL
LAAVPLDAKD QKLLDEMEQT AFSPELTRAA ERDGQQKQLK ALQDYWHNEL SPGLQHAQNA
HAVAEDVTRF VAGLDRLVTS FDHTTELRIE RVVLVHRVMA IFMALLLVFT IIWLRVRLLQ
PWKQLLSMAR AVSQRDFTQR ANISGRNEMA ALGSALNNMS EELAESYAVL EQRVQEKTAG
LEHKNQILSF LWQANRRLHS QAPLCERLSP VLNGLQNLTQ LHDIELRVYD LEDEDNHQEF
TCQSDISCDD KGCHLCPRSA LPMINGGTTL KWRLTDSHTQ YGILLATLPY GRHLSHDQQQ
LVDTLVEQLT ATLALDRHQE RQQQLIVMEE RATIARELHD SIAQSLSCMK MQVSCLQMQG
DVLPESSREL LSQIRNELNC SWAQLRELLT TFRLQLTEPG LRPALEASCQ EFSARFGFTV
KLDYQLPPRL VPSHQAIHLL QIAREALSNA LKHSHADDVV VTVTQCGKQV KLKVQDNGCG
VPENAERSNH YGMIIMRDRA QSLRGDCQVR RRETGGTEVT VTFIPETNFT ETQGDTHE
|
|---|
| |