| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1465 |
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| Symbol | yebU |
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| ID | 6872272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 1417690 |
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| End bp | 1419129 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642784621 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_002215291 |
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| Protein GI | 198244837 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.331125 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.160256 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTCAAC ACGCTGTCTA TTTTCCTGAC GCTTTTCTGA CGCAAATGCG TGAAGCAATG
CCTTCCACGC TCTCTTTTGA TGAATTTATT TCGGCCTGCC AACGCCCGTT GCGCCGCAGT
ATACGCATCA ATACGCTTAA AATATCCGTG GCTGATTTCC TTGCCCTAAT CGCGCCCTAC
GGCTGGTCGC TCACGCCAAT TCCGTGGTGT CATGAAGGAT TCTGGATCGA GCGCGATGAT
GAAGAGGCAT TGCCGCTTGG CAGTACCGCT GAGCATTTAA GCGGCCTGTT TTACATTCAG
GAGGCCAGTT CGATGCTGCC GGTCGCGGCC CTGTTCGCCG ATGATAATCA TCCGCAGCGG
GTCATGGATA TGGCAGCGGC GCCTGGCTCC AAAACCACGC AGATCGCTGC CCGCATGGGG
AACCGCGGCG CCATTCTGGC CAACGAATTT TCGGCCAGCC GCGTCAAAGT TCTGCACGCT
AATATCAGCC GATGTGGAAT CGCCAATACC GCACTGACGC ATTTCGATGG CCGCGTATTT
GGCGCTGCGT TACCGGAGAT GTTTGACGCT ATCCTGCTGG ATGCGCCCTG CTCTGGCGAA
GGCGTAGTAC GTAAAGATCC TGATGCGCTA AAAAACTGGT CGCCAGAAAG CAATCTGGAT
ATCGCGGCGA CACAGCGGGA ACTGCTCAAC AGCGCTTTTC ATGCTTTACG ACCCGGCGGC
ACGCTGGTCT ACTCCACCTG CACGTTAAAT CGCCAGGAAA ACGAAGAGGT CTGCCTCTGG
CTGAAAGAGA CCTACGCCGA CGCCGTTGAA TTTTTGCCGC TGGGTGATCT GTTTCCTGAC
GCTGACCGTG CCCTCACCCC GGAAGGCTTC CTGCACGTCT TCCCGCAAAT TTACGACTGC
GAAGGATTCT TCGTCGCACG TCTGCGTAAA ATGTCATCCC TTCCAGCCAT GCCCGCGCCG
GGGTATAAAG TGGGGGCGTT TCCTTTTACC CCCCTCAAAG GCCGCGAAGC ATTACACGTT
ACCCAGGCGG CCAACGCCGT CGGACTGTTA TGGGATGAAA ATCTCCATCT TTGGCAGCGT
GAAAAAGAGG TCTGGCTGTT CCCGGCAGAA ATTGAATCAC TGATCGGAAA AGTCCGTTTT
TCCCGGCTCG GCATTAAGCT GGCCGAAAGT CATAATAAAG GCTATCGCTG GCAACATGAG
GCGACGATAG CCCTTGCCTG CCCGACTCAT GCTCACGCGT TCGAACTTTC TGTGCAAGAG
GCGGAGGAGT GGTATCGCGG TCGGGATATT TATCCGCAAA CACCCCCTGC CGCTGATGAT
GTCCTGGTGA CGTTCCAGCA TCAGCCACTT GGTCTGGCAA AACGTATCGG CGCCAGAATA
AAGAACAGTT ACCCGCGTGA ACTGGTACGT GATGGCAAAC TCTTTACTGG TAATAGTTAA
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| Protein sequence | MAQHAVYFPD AFLTQMREAM PSTLSFDEFI SACQRPLRRS IRINTLKISV ADFLALIAPY
GWSLTPIPWC HEGFWIERDD EEALPLGSTA EHLSGLFYIQ EASSMLPVAA LFADDNHPQR
VMDMAAAPGS KTTQIAARMG NRGAILANEF SASRVKVLHA NISRCGIANT ALTHFDGRVF
GAALPEMFDA ILLDAPCSGE GVVRKDPDAL KNWSPESNLD IAATQRELLN SAFHALRPGG
TLVYSTCTLN RQENEEVCLW LKETYADAVE FLPLGDLFPD ADRALTPEGF LHVFPQIYDC
EGFFVARLRK MSSLPAMPAP GYKVGAFPFT PLKGREALHV TQAANAVGLL WDENLHLWQR
EKEVWLFPAE IESLIGKVRF SRLGIKLAES HNKGYRWQHE ATIALACPTH AHAFELSVQE
AEEWYRGRDI YPQTPPAADD VLVTFQHQPL GLAKRIGARI KNSYPRELVR DGKLFTGNS
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