Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1358 |
Symbol | |
ID | 6872796 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 1332968 |
End bp | 1334287 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642784526 |
Product | hypothetical protein |
Protein accession | YP_002215196 |
Protein GI | 198242970 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 0.00370523 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGCAACAGA TAGCCCGCTC TGTCGCCCTG GCATTTAATA ATCTGCCCCG ACCCCACCGC GTTATGCTGG GGTCACTTAC CGTTCTGACA CTGGCCGTCG CCGTATGGCG GCCCTATGTT TATCACCCAG AATCCGCACC AATCGTTAAA ACTATTGAAC TGGAGAAAAG CGAGATTCGT TCCCTCTTAC CGGAGGCCAG CGAACCCATC GATCAGGCCG CGCAGGAAGA TGAAGCTATT CCTCAGGATG AGCTGGACGA TAAAACCGCA GGCGAAGTCG GCGTCCATGA ATACGTCGTC TCTACAGGCG ATACGTTAAG CAGTATTCTG AATCAGTACG GCATCGATAT GAGCGATATT AGCCGACTTG CCGCTTCTGA TAAGGAGCTG CGCAATCTGA AAATTGGCCA ACAGCTTTCC TGGACACTGA CTGCCGATGG CGATTTACAG CGTCTGACAT GGGAAGTCTC CCGCCGTGAA ACGCGTACCT ACGATCGCAC TGCCAACGGT TTTAAAATGA GCAGTGAAAT GCAGCAGGGG GACTGGGTCA ACAGTCTGCT GAAAGGCACG GTAGGGGGTA GCTTTGTCGC CAGTGCGAAA GAGGCCGGTT TAACCAGCAG CGAAATCAGC GCAGTGATAA AAGCAATGCA GTGGCAGATG GATTTTCGGA AGCTGAAAAA GGGCGATGAA TTTTCGGTGC TGATGTCGCG CGAGATGCTG GATGGCAAGC GTGAACAGAG TCAGTTGTTG GGCGTGCGGA TGCGTTCCGA TGGTAAAGAT TACTACGCCA TTCGCGCCGC TGACGGTAAA TTCTATGACC GTAACGGTGT TGGCCTGGCG AAAGGCTTTT TACGCTTCCC GACCGCCAAA CAGTTCCGCA TCTCCTCCAA CTTCAATCCG CGTCGTCTGA ACCCGGTTAC CGGACGCGTT GCGCCGCATC GTGGCGTTGA CTTTGCGATG CCGCAGGGTA CGCCGGTGCT GTCGGTGGGG GATGGCGAGG TCGTGGTCGC TAAACGTAGC GGCGCTGCCG GTTACTACAT TGCGATTCGT CATGGACGCA CCTACACCAC ACGTTACATG CACTTGCGTA AGCTGCTGGT GAAACCGGGG CAAAAAGTGA AACGTGGCGA TCGTATTGCG CTTTCTGGTA ACACCGGGCG TTCCACAGGG CCGCATCTGC ATTATGAAGT ATGGATAAAC CAGCAAGCCG TTAACCCTCT AACAGCAAAA TTGCCGCGCA CGGAAGGTCT GACGGGGTCA GATCGTCGTG AATACCTGGC ACAGGTGAAA GAGGTTCTGC CACAACTGCG CTTCGATTAA
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Protein sequence | MQQIARSVAL AFNNLPRPHR VMLGSLTVLT LAVAVWRPYV YHPESAPIVK TIELEKSEIR SLLPEASEPI DQAAQEDEAI PQDELDDKTA GEVGVHEYVV STGDTLSSIL NQYGIDMSDI SRLAASDKEL RNLKIGQQLS WTLTADGDLQ RLTWEVSRRE TRTYDRTANG FKMSSEMQQG DWVNSLLKGT VGGSFVASAK EAGLTSSEIS AVIKAMQWQM DFRKLKKGDE FSVLMSREML DGKREQSQLL GVRMRSDGKD YYAIRAADGK FYDRNGVGLA KGFLRFPTAK QFRISSNFNP RRLNPVTGRV APHRGVDFAM PQGTPVLSVG DGEVVVAKRS GAAGYYIAIR HGRTYTTRYM HLRKLLVKPG QKVKRGDRIA LSGNTGRSTG PHLHYEVWIN QQAVNPLTAK LPRTEGLTGS DRREYLAQVK EVLPQLRFD
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