Gene SeD_A1358 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1358 
Symbol 
ID6872796 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1332968 
End bp1334287 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content54% 
IMG OID642784526 
Producthypothetical protein 
Protein accessionYP_002215196 
Protein GI198242970 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0739] Membrane proteins related to metalloendopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value0.00370523 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGCAACAGA TAGCCCGCTC TGTCGCCCTG GCATTTAATA ATCTGCCCCG ACCCCACCGC 
GTTATGCTGG GGTCACTTAC CGTTCTGACA CTGGCCGTCG CCGTATGGCG GCCCTATGTT
TATCACCCAG AATCCGCACC AATCGTTAAA ACTATTGAAC TGGAGAAAAG CGAGATTCGT
TCCCTCTTAC CGGAGGCCAG CGAACCCATC GATCAGGCCG CGCAGGAAGA TGAAGCTATT
CCTCAGGATG AGCTGGACGA TAAAACCGCA GGCGAAGTCG GCGTCCATGA ATACGTCGTC
TCTACAGGCG ATACGTTAAG CAGTATTCTG AATCAGTACG GCATCGATAT GAGCGATATT
AGCCGACTTG CCGCTTCTGA TAAGGAGCTG CGCAATCTGA AAATTGGCCA ACAGCTTTCC
TGGACACTGA CTGCCGATGG CGATTTACAG CGTCTGACAT GGGAAGTCTC CCGCCGTGAA
ACGCGTACCT ACGATCGCAC TGCCAACGGT TTTAAAATGA GCAGTGAAAT GCAGCAGGGG
GACTGGGTCA ACAGTCTGCT GAAAGGCACG GTAGGGGGTA GCTTTGTCGC CAGTGCGAAA
GAGGCCGGTT TAACCAGCAG CGAAATCAGC GCAGTGATAA AAGCAATGCA GTGGCAGATG
GATTTTCGGA AGCTGAAAAA GGGCGATGAA TTTTCGGTGC TGATGTCGCG CGAGATGCTG
GATGGCAAGC GTGAACAGAG TCAGTTGTTG GGCGTGCGGA TGCGTTCCGA TGGTAAAGAT
TACTACGCCA TTCGCGCCGC TGACGGTAAA TTCTATGACC GTAACGGTGT TGGCCTGGCG
AAAGGCTTTT TACGCTTCCC GACCGCCAAA CAGTTCCGCA TCTCCTCCAA CTTCAATCCG
CGTCGTCTGA ACCCGGTTAC CGGACGCGTT GCGCCGCATC GTGGCGTTGA CTTTGCGATG
CCGCAGGGTA CGCCGGTGCT GTCGGTGGGG GATGGCGAGG TCGTGGTCGC TAAACGTAGC
GGCGCTGCCG GTTACTACAT TGCGATTCGT CATGGACGCA CCTACACCAC ACGTTACATG
CACTTGCGTA AGCTGCTGGT GAAACCGGGG CAAAAAGTGA AACGTGGCGA TCGTATTGCG
CTTTCTGGTA ACACCGGGCG TTCCACAGGG CCGCATCTGC ATTATGAAGT ATGGATAAAC
CAGCAAGCCG TTAACCCTCT AACAGCAAAA TTGCCGCGCA CGGAAGGTCT GACGGGGTCA
GATCGTCGTG AATACCTGGC ACAGGTGAAA GAGGTTCTGC CACAACTGCG CTTCGATTAA
 
Protein sequence
MQQIARSVAL AFNNLPRPHR VMLGSLTVLT LAVAVWRPYV YHPESAPIVK TIELEKSEIR 
SLLPEASEPI DQAAQEDEAI PQDELDDKTA GEVGVHEYVV STGDTLSSIL NQYGIDMSDI
SRLAASDKEL RNLKIGQQLS WTLTADGDLQ RLTWEVSRRE TRTYDRTANG FKMSSEMQQG
DWVNSLLKGT VGGSFVASAK EAGLTSSEIS AVIKAMQWQM DFRKLKKGDE FSVLMSREML
DGKREQSQLL GVRMRSDGKD YYAIRAADGK FYDRNGVGLA KGFLRFPTAK QFRISSNFNP
RRLNPVTGRV APHRGVDFAM PQGTPVLSVG DGEVVVAKRS GAAGYYIAIR HGRTYTTRYM
HLRKLLVKPG QKVKRGDRIA LSGNTGRSTG PHLHYEVWIN QQAVNPLTAK LPRTEGLTGS
DRREYLAQVK EVLPQLRFD