Gene SeD_A1280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1280 
Symbol 
ID6872380 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1265947 
End bp1267431 
Gene Length1485 bp 
Protein Length494 aa 
Translation table11 
GC content51% 
IMG OID642784451 
Productcytoplasmic alpha-amylase 
Protein accessionYP_002215124 
Protein GI198243719 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0337681 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones60 
Fosmid unclonability p-value0.462612 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAACC CCACGTTATT GCAGTACTTC CACTGGTATT ATCCCGACGG CGGTAAACTC 
TGGTCTGAGC TGGCGGAACG TGCTGATGGG CTGAATGATA TCGGTATCAA TATGGTCTGG
CTACCGCCCG CCTGTAAAGG CGCCTCCGGC GGCTATTCCG TAGGCTATGA TACCTACGAC
TTGTTTGACC TCGGCGAATT TGACCAAAAA GGAACTATCG CGACAAAGTA CGGCGATAAA
CGCCAGTTAC TGACGGCGAT AGACGCGCTC AAAAAAAATA ATATTGCGGT GCTGCTCGAC
GTCGTCGTGA ACCACAAAAT GGGCGCAGAC GAAAAAGAAC GTATTCGCGT TCAGCGCGTG
AATCAGGATG ACCGCACGCA AATCGATGAC AACATCATTG AATGCGAAGG CTGGACGCGC
TACACCTTCC CTGCCCGCGC GGGCCAGTAT TCCAACTTTA TTTGGGACTA TCACTGTTTC
AGCGGCATTG ATCACATCGA GAATCCCGAC GAAGACGGCA TTTTTAAGAT CGTCAATGAC
TATACCGGCG ATGGCTGGAA CGATCAGGTT GATGATGAGC TGGGTAATTT CGACTATCTG
ATGGGGGAAA ATATCGATTT TCGCAATCAC GCGGTTACGG AAGAGATTAA ATATTGGGCT
CGTTGGGTCA TGGAACAAAC CCACTGTGAC GGCTTTCGCC TGGACGCGGT AAAACATATA
CCCGCCTGGT TTTATAAAGA ATGGATTGAG CATGTACAGG CGGTTGCGCC AAAACCGCTG
TTTATTGTCG CAGAATACTG GTCGCATGAA GTGGATAAAC TGCAAACGTA CATCGATCAG
GTCGACGGGA AAACCATGCT GTTCGACGCG CCGTTGCAGA TGAAATTTCA TGAAGCCTCG
CGCCAGGGCG CGGAGTATGA CATGCGCCAC ATTTTCACCG GCACGCTGGT AGAAGCCGAC
CCTTTTCATG CGGTGACGCT GGTCGCTAAC CACGATACAC AACCGTTACA GGCGCTGGAA
GCGCCGGTAG AACCCTGGTT CAAACCATTG GCCTATGCGC TGATCCTGCT TCGTGAAAAC
GGCGTACCGT CGGTGTTTTA TCCCGATTTA TACGGCGCCA GCTATGAGGA TAATGGCGAA
AATGGCGAGA CCTGTCGGGT CGACATGCCG GTGATTAACC AACTGGATCG GCTGATCCTC
GCTCGTCAGC GTTTTGCGCA CGGTATACAA ACACTCTTTT TCGATCATCC TAACTGTATC
GCCTTTAGTC GCAGCGGTAC TGAAGAGAAT CCAGGCTGTG TGGTTGTACT TTCCAATGGC
GACGACGGTG AAAAAACCCT CCTGCTCGGC GACAATTACG CTAACAAGAC CTGGCGTGAT
TTTCTGGGAA ACCGCAGTCA GCATGTTGTA ACTAATGATC AAGGCGAAGC GACGTTCTTC
TGCAACGCAG GCAGCGTCAG CGTGTGGGTC ATTGAGGACG TGTGA
 
Protein sequence
MKNPTLLQYF HWYYPDGGKL WSELAERADG LNDIGINMVW LPPACKGASG GYSVGYDTYD 
LFDLGEFDQK GTIATKYGDK RQLLTAIDAL KKNNIAVLLD VVVNHKMGAD EKERIRVQRV
NQDDRTQIDD NIIECEGWTR YTFPARAGQY SNFIWDYHCF SGIDHIENPD EDGIFKIVND
YTGDGWNDQV DDELGNFDYL MGENIDFRNH AVTEEIKYWA RWVMEQTHCD GFRLDAVKHI
PAWFYKEWIE HVQAVAPKPL FIVAEYWSHE VDKLQTYIDQ VDGKTMLFDA PLQMKFHEAS
RQGAEYDMRH IFTGTLVEAD PFHAVTLVAN HDTQPLQALE APVEPWFKPL AYALILLREN
GVPSVFYPDL YGASYEDNGE NGETCRVDMP VINQLDRLIL ARQRFAHGIQ TLFFDHPNCI
AFSRSGTEEN PGCVVVLSNG DDGEKTLLLG DNYANKTWRD FLGNRSQHVV TNDQGEATFF
CNAGSVSVWV IEDV