Gene SeD_A1278 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1278 
Symbol 
ID6874340 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp1264103 
End bp1265308 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content57% 
IMG OID642784449 
Productputative inner membrane protein 
Protein accessionYP_002215122 
Protein GI198242438 
COG category[R] General function prediction only 
COG ID[COG2391] Predicted transporter component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.0195044 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones62 
Fosmid unclonability p-value0.580046 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATGGC AACACTTCAA GCAAACCTGG TTAATTAAAT TCTGGGCGCC GGCCCCTGCG 
GTGATCGCAG CCGGTATTCT CTCTACCTAC TATTTTGGCA TCACCGGCAC GTTTTGGGCC 
GTGACGGGCG AATTTACCCG CTGGGGCGGG CAAATTTTGC AGCTTTTTGG CGTTCATGCC 
GAACAGTGGG GCTACTACAA GCTGATTCAT CTGGAAGGTA CGCCGCTGAC GCGTATCGAC 
GGCATGATGA TCCTCGGCAT GTTCGGCGGC TGTTTCGCCG CGGCGCTGTG GGCCAACAAC 
GTAAAACTGC GTATGCCGCG CAGCCGAATC CGTATCGTAC AGGCGGTGGT CGGAGGCATG 
ATCGCTGGCT TCGGCGCGCG TCTGGCGATG GGGTGTAACC TGGCCGCCTT TTTTACCGGG 
ATCCCGCAGT TCTCCCTACA CGCGTGGTTC TTTGCGCTAG CGACCGCTAT CGGCTCCTGG 
TTCGGCGCCC GCTTTACGTT GCTGCCGATA TTTCGCATAC CGGTGAAAAT GCAGAAGGTC 
TCCGCGGCTT CGCCACTGAC GCAGAAACCG GATCAGGCAA GACGGCGTTT CAGGCTCGGT 
ATGCTGGTCT TTATCGGCAT GATTGGCTGG GCGTTATTAA CGGCAATGCA TCAGCCGAAA 
CTGGGGCTGG CGATGCTGTT CGGCGTCGGG TTTGGGCTGC TGATCGAGCG CGCGCAAATC 
TGCTTTACTT CGGCCTTTCG CGATCTGTGG ATCTCCGGAC GCGCCCATAT GGCGAAAGCG 
ATTATTTTCG GCATGGCGGT CAGCGCCATT GGTATTTTCA GCTACGTGCA GTTGGGCGTT 
GCACCTAAAA TTATGTGGGC TGGCCCGAAT GCGGTCATTG GCGGACTGCT GTTCGGTTTT 
GGCATCGTGC TGGCGGGCGG CTGCGAAACC GGCTGGATGT ACCGCGCCGT AGAAGGCCAG 
GTGCATTATT GGTGGGTGGG CCTCGGCAAT GTCATCGGTT CAACCATCCT GGCTTACTAC 
TGGGATGATT TCGCGCCCGC GCTGGCGACC AGTTGGGATA AAGTTAACCT GCTGAATACC 
TTTGGTCCGC TGGGGGGTCT GCTGGTCACC TACCTGTTAT TATTTGCCGC GCTGATGTTA 
ATTATCGGCT GGGAAAAACG TTTTTTCCGC CGTGCGGGGC TGACGCCTGC TAAGGAATCT 
GTATGA
 
Protein sequence
MSWQHFKQTW LIKFWAPAPA VIAAGILSTY YFGITGTFWA VTGEFTRWGG QILQLFGVHA 
EQWGYYKLIH LEGTPLTRID GMMILGMFGG CFAAALWANN VKLRMPRSRI RIVQAVVGGM 
IAGFGARLAM GCNLAAFFTG IPQFSLHAWF FALATAIGSW FGARFTLLPI FRIPVKMQKV 
SAASPLTQKP DQARRRFRLG MLVFIGMIGW ALLTAMHQPK LGLAMLFGVG FGLLIERAQI 
CFTSAFRDLW ISGRAHMAKA IIFGMAVSAI GIFSYVQLGV APKIMWAGPN AVIGGLLFGF 
GIVLAGGCET GWMYRAVEGQ VHYWWVGLGN VIGSTILAYY WDDFAPALAT SWDKVNLLNT 
FGPLGGLLVT YLLLFAALML IIGWEKRFFR RAGLTPAKES V