Gene SeD_A1253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1253 
Symbol 
ID6873558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1247643 
End bp1249355 
Gene Length1713 bp 
Protein Length570 aa 
Translation table11 
GC content54% 
IMG OID642784425 
Productcellulose synthesis regulatory protein 
Protein accessionYP_002215098 
Protein GI198245164 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value0.839594 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGCACG AAACACTGTT AGACAATCAA GGCTGGTTTA AAAAGCTGGC GCGGCGTTTT 
GGTCCCGGTC ATGTCGTCAA CACCTGTTTT CTGATCGTGA TGCTGTTCTC GACGCTACTT
ACCTGGCGGG AAGTGATGAT ACTGAAAGAC GCGTATGTCG CCAGTCAGCG CAATCATCTG
GGGAGCGTCG CGAATGTCCT TGACCGCCAA CTGCAATTCA ACATGGACAG GTTGATCTTT
TTACGCAACG GTATGCATGA AGCGCTGGTG GCGCCGCTGG CTTTTTCCGC ATTGCAAAGC
GCGGTGACGC AGTTTGAGCA ACGACGCGTC AGACATTTCT GGCAACTGGA GCTGGATAAG
CGGCGGACAT TGCCGTTATA TGGCGTTTCC GATCAATTTG TCGCCCGGAC GACGCTTCTT
TCGCGGGAGA GTCGTGACCT GGCAAATGAA TTAACCGCCA CGCTGGAGTT AGGGTATCTG
GCGCGTCTGG CGCGCTCATC CGCCATGCTG ACGCTGGAGA CGATGTATGT TTCTCGCTCA
GGGTTTTACC TCTCAACTCT CCCTACGGCG TACGGTAGCG ATATTGTCTC CCGTTACTAT
CAGTACGTGA CCCAGCCCTG GTTTATCGAG CAAAGCCAAC GGCGTAACCC ACAGCGCGGC
GTGCGGTGGT TTACCTCCGC ACAGCCCTAT GTTGCTGACG AGCAGAAAAA AGTGACAGCC
AGTCTACCGC TGGATCACGA TAATTACTGG TATGGCGTAC TGGCAATGGA TATTCCCGTC
GCGTCATTAC AGCGGTTCCT GCGCGATGCG GCCGAAAAGG ATATTGAAGG GGAATATCAG
CTATACGATA ACCATCTCCG TTTGTTGACG GACTCCGCGC CGGAACAACA AACCGCGAAT
ACGTTAAATG ACCGTGAGCG CGCCTTACTG GCGCGTGAAA TAGAAAAAGA TACCCTGGGC
GGGCTGCGTT TAGGAACGCA TTATGTAAGC TGGGAGCGAC TGGATCATTT TGATGGCGTC
CTGCTGCGCG TGCATACATT ACGTGAAGGC ATCCAAGGGA ATTTTGGCAG TATTAGTATC
GCGCTGACGC TGTTATGGGT GCTTTTTACG GCGATGCTGT TGATCTCCTG GGGCGTTATT
CGACATATGG TCAAAAACAT GTTTGTTCTG CAAAATTCGC TGCAATGGCA GGCATGGCAC
GATCCGCTGA CCCGGCTATA TAACCGTGGC GCGCTGTTTG AAAAAGCGTC CAGGCTGGCA
AAGCGCTATC GGGAAGCCCG CCAGCCATTT TCTGTGATAC AGCTGGATTT AGATTATTTT
AAAAGCGTTA ACGATCGCTT TGGCCATCAG GCAGGCGATC GCGTGTTGTC CCATGCCGCT
GGGCTCATTG GCAGCACCAT TCGAGCGCAC GACATCGCCG GACGGGTAGG AGGCGAAGAG
TTTTGTATCG TGCTGCCCGG CGCGACGAAA GCGCAGGCGC TGCAGATTGC CGAACGCATA
CGCCAGCGCA TTAATGACAA AGAGATTCTG GTGACGAAAA GCACGACGCT TCGTATCAGC
GCGTCAATGG GGATCAGTAG CGCGGAGGAA TACGGCGACT ATGATTTTGA GCAGTTGCAG
TCGCTGGCCG ACAAACGGCT TTATTACGCC AAACAGTCCG GACGTAACCG TATTTGCGCC
AGCGACGCGA CTCAGGAGCG GGAAAAGAAA TAG
 
Protein sequence
MPHETLLDNQ GWFKKLARRF GPGHVVNTCF LIVMLFSTLL TWREVMILKD AYVASQRNHL 
GSVANVLDRQ LQFNMDRLIF LRNGMHEALV APLAFSALQS AVTQFEQRRV RHFWQLELDK
RRTLPLYGVS DQFVARTTLL SRESRDLANE LTATLELGYL ARLARSSAML TLETMYVSRS
GFYLSTLPTA YGSDIVSRYY QYVTQPWFIE QSQRRNPQRG VRWFTSAQPY VADEQKKVTA
SLPLDHDNYW YGVLAMDIPV ASLQRFLRDA AEKDIEGEYQ LYDNHLRLLT DSAPEQQTAN
TLNDRERALL AREIEKDTLG GLRLGTHYVS WERLDHFDGV LLRVHTLREG IQGNFGSISI
ALTLLWVLFT AMLLISWGVI RHMVKNMFVL QNSLQWQAWH DPLTRLYNRG ALFEKASRLA
KRYREARQPF SVIQLDLDYF KSVNDRFGHQ AGDRVLSHAA GLIGSTIRAH DIAGRVGGEE
FCIVLPGATK AQALQIAERI RQRINDKEIL VTKSTTLRIS ASMGISSAEE YGDYDFEQLQ
SLADKRLYYA KQSGRNRICA SDATQEREKK