Gene SeD_A1248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1248 
Symbol 
ID6873542 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1242570 
End bp1243265 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content55% 
IMG OID642784420 
Producthypothetical protein 
Protein accessionYP_002215093 
Protein GI198242244 
COG category[R] General function prediction only 
COG ID[COG1418] Predicted HD superfamily hydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.820142 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones68 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTCAG GATACTGGCA ATCGCAGTTT GAAGACTGGC TACGTCACCA CCACCAGGAA 
CAGGATGCCG CCCATGACAT CTTCCATTTT CGTCGTGTTT GGGCAACCGC GCAAACGCTC
GGGGAAAACA GTCCTGTCGA CTGGCTGGTG GTGCTATCGG CATGTTATTT CCATGACATC
GTCAGCCTGG CGAAAAATCA TCCGCAGCGG CATCGTTCTT CCATTCTGGC GGCGGCAGAA
ACCCGACGTA TTTTTCTGCG GGATTTTCCT GACTTTCCGG CAGAAAAACT GGCGGGCATT
TGTCATGCTA TCGAAGCGCA TAGCTTCAGC GCAAAAATTG CGCCTACCAC GCCAGAGGCA
AAAATCGTGC AGGATGCAGA CAGGTTGGAG GCGTTGGGCG CCATTGGCCT GGCGCGGGTC
TTCGCGGTCT CCGGCGCGCT GGGCGTCGCG CTGTTTGATG CCGACGATCC CTTTGCCGAC
AGACGGCCTC TTAACGATAA GCAATTCGCG CTCGACCATT TTCAAACCAA ACTGCTGAAA
CTGCCGCTGA CGATGCAGAC CGAACGGGGC AAGTCCCTGG CGCAGCGTAA TGCGGATTTT
CTGGTGTCGT ACATGGCGAA ACTGAGCGCT GAGCTGAAAG GCGACTATGA AACACGGGAT
GAGGCGGTCA TCCAGATGTT TGCTACGCAT CAGTAA
 
Protein sequence
MDSGYWQSQF EDWLRHHHQE QDAAHDIFHF RRVWATAQTL GENSPVDWLV VLSACYFHDI 
VSLAKNHPQR HRSSILAAAE TRRIFLRDFP DFPAEKLAGI CHAIEAHSFS AKIAPTTPEA
KIVQDADRLE ALGAIGLARV FAVSGALGVA LFDADDPFAD RRPLNDKQFA LDHFQTKLLK
LPLTMQTERG KSLAQRNADF LVSYMAKLSA ELKGDYETRD EAVIQMFATH Q