Gene SeD_A1245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1245 
Symbol 
ID6875284 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp1240318 
End bp1240716 
Gene Length399 bp 
Protein Length132 aa 
Translation table11 
GC content45% 
IMG OID642784418 
Productouter membrane protein N 
Protein accessionYP_002215091 
Protein GI198242830 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.950154 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value0.879183 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACTCTG AAACCCGCAA TATGACCTCT TATGGAGACA GCGACTATCA CTCTGCAGAC 
GGTAAGTTGG GTGGCGGCGG TATCGCTAAC AAAACCCAGA ACTTTGAAGT GGTTGCACAG 
TATCAGTTCG ATTTCGGTCT GCGTCCGTCC ATCGCCTACT TGCAGTCTAA GGGCAAAGAT 
TTAGGCGGCC AGGATATGGA TAGCCATGGT AACTATCGTT ACACCGACAA AGATTTGGTT 
AAATATGTTG ACGTCGGTAT GACTTACTAC TTCAACAAAA ATATGTCCAC CTACGTTGAT 
TATAAAATCA ACCTGCTGGA CGAAGATGAT GACTTCTACG CAAACAACGG TATTGCAACC 
GATGATATTG TAGGTGTTGG TCTGGTCTAC CAGTTCTAA
 
Protein sequence
MYSETRNMTS YGDSDYHSAD GKLGGGGIAN KTQNFEVVAQ YQFDFGLRPS IAYLQSKGKD 
LGGQDMDSHG NYRYTDKDLV KYVDVGMTYY FNKNMSTYVD YKINLLDEDD DFYANNGIAT 
DDIVGVGLVY QF