| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1229 |
|---|
| Symbol | |
|---|
| ID | 6873024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 1223737 |
|---|
| End bp | 1225209 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642784408 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002215081 |
|---|
| Protein GI | 198241800 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 0.159101 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTAC AGGAAGAAGA ACTTGTTTCC ACCCGCACTG AACAGGGAAG CCATGCCCCG
TCGTTGCTTG ATGAAATCAT GGCACAAACC CGTATCCAGC CCGGCGCTGA CGGTTATGAT
ATTGCCCGTC AGGGCGTAAC GGCTTTTATT GCCAGCCTCC TGCAATCCAC TTCACCTGCA
GAACCCGTAA ACAAACTGGC CGTGGACAGC ATGATTGCGG ACATCGACGC CCGTATCAGC
CGTCAGATGG ATGCTATTAT TCACGCCCCT CAGTTTCAGC AACTGGAGTC GTTCTGGCGT
TCAATGAAAG CGCTGGTCGA TCGCGTTGAT TTTCGTGAGA ATATTAAGGT GCATGTCCTC
CATGTCACCA AAGCGGAATT GCTGGAAGAT TTCGAGTTCG CGCCGGAGAT TACCCAGTCC
GGCTTCTATA AGCATGTTTA TTCCAGCGGG TTTGGGCAGT TTGGCGGCGA ACCGATTGCG
GCTGTGCTGG GCGCATATGA GTTCAAAAAT ACCACGCCGG ATATGAAGCT GCTGAACTAT
GTCAGCGCCG TCGGCGCAAT GGCTCACGCG CCGTTCCTTT CTTCCGTGTC GCCGGAGTTT
ATGGGCCTGA AATCATGGAC CGAGCTGCCC AATATCAAGG ATCTCTACGC CATTTTTGAA
GGTCCGGCCT ACACAAAATG GCGCGCCCTG CGTGATTCCG AAGATTCCCG CTACCTGGGA
CTGACCGCGC CGCGTTTTCT GCTTCGCCAG CCCTATTCCG CGACCGAAAA CCCGATTAAA
AGCTTCAACT ACGCCGAAGA TGTGAGCCAC AGCCACGAGC ATTATTTGTG GGGCAATACC
GCCTGGATGC TGGCCAGTAA TATAGCCGAT TCGTTCGCGA AATACCGGTG GGCGCCCAAT
ATTATCGGGC CGCAGAGCGG CGGCGCAGTA AAAGATCTGC CGGTACATTT ATATGAGTCA
ATGGGGCAGA TTCAGGCCAA GATCCCGACG GAGGTGTTGA TCACCGACCG CCGTGAGTTC
GAGCTGGCCG AAGAGGGGTT CATCACCCTG ACCATGCGTA AAAACAGCGA TAATGCGGCG
TTTTTCTCGG CTAACAGCGT TCAGAAACCC AAGCATTTTC CGGGCAAAGA CGCCGAGACC
AACTACAAGC TGGGTACGCA GTTGCCTTAT CTGTTCATTA TTAACCGCCT CGCGCACTAC
ATTAAGGTGC TGCAACGCGA GCAGCTTGGG TCGTGGAAAG AGAGAAGCGA TCTGGAGCGG
GAGCTGAATA TTTGGGTGCG CCAGTATGTC GCCGATCAGG AGAATCCGCC TGCTGATGTC
CGCAGCCGTA AGCCGCTGCG TGGCGCTAAA GTGGAGGTGC TGGATGTGGA CGGCGAGCCG
GGCTGGTATC AGGTGGCGAT TTCCGCAAGG CCGCACTTTA AATATATGGG CGCGTCGTTT
GAATTGTCTT TAGTCGGACG GTTAGATAAG TGA
|
|---|
| Protein sequence | MSLQEEELVS TRTEQGSHAP SLLDEIMAQT RIQPGADGYD IARQGVTAFI ASLLQSTSPA
EPVNKLAVDS MIADIDARIS RQMDAIIHAP QFQQLESFWR SMKALVDRVD FRENIKVHVL
HVTKAELLED FEFAPEITQS GFYKHVYSSG FGQFGGEPIA AVLGAYEFKN TTPDMKLLNY
VSAVGAMAHA PFLSSVSPEF MGLKSWTELP NIKDLYAIFE GPAYTKWRAL RDSEDSRYLG
LTAPRFLLRQ PYSATENPIK SFNYAEDVSH SHEHYLWGNT AWMLASNIAD SFAKYRWAPN
IIGPQSGGAV KDLPVHLYES MGQIQAKIPT EVLITDRREF ELAEEGFITL TMRKNSDNAA
FFSANSVQKP KHFPGKDAET NYKLGTQLPY LFIINRLAHY IKVLQREQLG SWKERSDLER
ELNIWVRQYV ADQENPPADV RSRKPLRGAK VEVLDVDGEP GWYQVAISAR PHFKYMGASF
ELSLVGRLDK
|
|---|
| |