| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1225 |
|---|
| Symbol | |
|---|
| ID | 6871630 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 1219103 |
|---|
| End bp | 1220389 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642784404 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002215077 |
|---|
| Protein GI | 198243153 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3456] Uncharacterized conserved protein, contains FHA domain |
|---|
| TIGRFAM ID | [TIGR03354] type VI secretion system FHA domain protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.980382 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 0.728798 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGAAG AAAAAGCGCG GCAACAGACG CTTTCACTGC ATGTCGTTAA CGGTAACGAG
CTGGAGAGCG GACGTACCGC ACGGTGTCTG TTCACCGGAG ACGGCGATGT GGGCCACGGC
AGCGAATGCC ACTGGCCTGT TCAGGACCGG CACCAGAACG TTCCGGCGAA GGCGTTCAGC
ATCAGCCTGC ATGATGGCGC ATTCTGCCTG CATCCGCTGG CATCGCCATT ATGGCTGAAC
CAGGCTAAAG TCACGGCGGC CTCAGACCAG GTGCAGTTAC GTCAGGGCGA TGAGATCCAG
ACCGGGCATC TGATACTCCG GGTTTATCTG AACCAGGGCG GGATGCGGCA TTACGATGAG
GAGATGGCGA CGCCTGAAAC CATCGTTTCT AACCACGACC TCCTGTCGGA CACGCTACTG
TCCACGGACG GCGCGCCGGA ATATCCGGGA ATGCCGTCCC GCCATCAGCT CGCGGATACC
GTTGTTAATG GCTTTTCCAC CGATCCGTTG CAGGTGCTCC AGGCTGAAAG TCTGACCACC
AGGGACAATC CGCTTGCGGG TATCACCCCG GCCCGGCCCT CCGCCCCGTT ATCCGATCCG
GCGATAAACG GCGGGATCAA CACGCCGTTT ATGGATCTGC CGTCCATGTA TGCCGATCCG
CATGATAATG AAGAGGGCAT GTCACCGGCA GACGCGGCGC AGCGCCACCT CGCCGTCACG
CCGTTACTGC GCGGGCTGGG GGGATCGCTT GCCGTGCATA ACACCCAAGA CGCCGATGAT
TTTCTGGAGG AGGCCGGAAG GACATTGCAG GCGGCGATTC AGGGGTTGCT TGAGCTACAG
CAGCGCCGCA ACAGCCTGTC AGACAAGCAT CTGCGCCCGC TGGAAGATAA CCCGCTGCGC
CTGAATATGG ACTACGCCAC GGCGCTGGAC GTGCTGTTTG CCGAAGGGAA AAGCCCGGTA
CATCTGGCCG CGCCCGCCGC CGTCAGCGAG AGCCTGCGCA ATATTCGTCA TCACGAAGAA
GCCAACCGCG CCGCGATTGT GGAATCGCTG CGCGTGCTGC TGGACGCCTT CTCGCCACAG
AGTCTGATGC GCCGTTTTGT GCAGTACCGC CGCAGCCACG AACTGCGTAA ACCGCTGGAT
GATGCCGGTG CGTGGCAGAT GTACTGCGAT TATTACGATG AGCTGGCCTC CAGCCGCCAG
CAGGGTTTTG AGATGCTGTT TAACGAAGTG TATGCCCAGG TGTATGACCG GGTGTTGCGT
GAAAAGCAGC GGGAGCCGGA AGCATGA
|
|---|
| Protein sequence | MAEEKARQQT LSLHVVNGNE LESGRTARCL FTGDGDVGHG SECHWPVQDR HQNVPAKAFS
ISLHDGAFCL HPLASPLWLN QAKVTAASDQ VQLRQGDEIQ TGHLILRVYL NQGGMRHYDE
EMATPETIVS NHDLLSDTLL STDGAPEYPG MPSRHQLADT VVNGFSTDPL QVLQAESLTT
RDNPLAGITP ARPSAPLSDP AINGGINTPF MDLPSMYADP HDNEEGMSPA DAAQRHLAVT
PLLRGLGGSL AVHNTQDADD FLEEAGRTLQ AAIQGLLELQ QRRNSLSDKH LRPLEDNPLR
LNMDYATALD VLFAEGKSPV HLAAPAAVSE SLRNIRHHEE ANRAAIVESL RVLLDAFSPQ
SLMRRFVQYR RSHELRKPLD DAGAWQMYCD YYDELASSRQ QGFEMLFNEV YAQVYDRVLR
EKQREPEA
|
|---|
| |