Gene SeD_A1220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1220 
Symbol 
ID6874236 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp1212994 
End bp1213731 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content62% 
IMG OID642784399 
Producttype VI secretion-associated protein 
Protein accessionYP_002215072 
Protein GI198243272 
COG category 
COG ID 
TIGRFAM ID[TIGR03360] type VI secretion-associated protein, VC_A0118 family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value0.225071 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGAA TGCAGACGCT CCTGATCATG GCGCTACTGC CGGGATTACT CCCCGGCGCA 
GTACAGGCGG AAACCGCGGC CAAACAGGCG GCTGCCGCGC TGCCGGGAAT TGTGGTGCCG 
GGCGTCCCGG AAACAGACGC ACAGGCGACA CTCAGCGCCA TGACGGCCTG TCGCCGGGAG 
CCTGCGGCGC TGGAGCGTCT GGACTGCTAC GACAAAATCC TCACCCCGGA GCAGCCCGGT 
TTTGCCAGCG CGCTGGTGAA GGCAAAATAC GAAGGGGAAG CCTGGAAACG CGCCTTCGCC 
CAGGAAAAAC AGCGCCCGGA CAACTCCACC GCGCTGATAA TGACGCAGAG CGGCGGCGAG 
CGGCCAACGG TGATTATCAC CACGCCCGCC ATCGGCAACG TACCGCCGCG CCCGGTGCTG 
ATGTTCAGCT GCGTGGACAA CATCACCCGG ATGCAGGTGG CGCTGACCCA CGCCATGACG 
CCGGACAGCA TCGACGTGAC GCTGACCGCC GATACCCGAC AGATTCGGTC GCGCTGGTTT 
ATCCGCGAAA ACGGCACCCT GCTGGAGTCC AGCCGGGGCT TATCCGGCAT CGACGAAATA 
AAACAACTTT TCGGCGCAAA AACGCTGACC ATTGATACCG GCACCGACAG CGCAGCCGGA 
AAACTGACGT TTAACATTGA TGGACTGGCA AAAACCATCG CGCCGCTGCG TGAAGCCTGT 
CACTGGGCGG GAGAATAA
 
Protein sequence
MSRMQTLLIM ALLPGLLPGA VQAETAAKQA AAALPGIVVP GVPETDAQAT LSAMTACRRE 
PAALERLDCY DKILTPEQPG FASALVKAKY EGEAWKRAFA QEKQRPDNST ALIMTQSGGE 
RPTVIITTPA IGNVPPRPVL MFSCVDNITR MQVALTHAMT PDSIDVTLTA DTRQIRSRWF 
IRENGTLLES SRGLSGIDEI KQLFGAKTLT IDTGTDSAAG KLTFNIDGLA KTIAPLREAC 
HWAGE