Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1216 |
Symbol | |
ID | 6875047 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 1206170 |
End bp | 1206649 |
Gene Length | 480 bp |
Protein Length | 159 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 642784395 |
Product | HNH endonuclease domain-containing protein |
Protein accession | YP_002215068 |
Protein GI | 198242614 |
COG category | [S] Function unknown |
COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.516867 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 0.131262 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAATT TAATTTATTT AACACTGAAC GGTGAAAAGC AAGGATTGAT TTCAGCAGGT TGTTGTTCCC TCGACTCTAT CGGTAATAAA GCACAGTTAC TGCACCTTGA TCATATTATG GTATATGAAC TGACACATGG GTTAAGTCGG GATCAAAATG TCAATCATCA TTCAGTTACG ATAAAAAAAC CTGTCGATAA ATCATCTCCT TTACTGGGAA AAGCAATTAA CGATAATGAA ATATTGACCT GCACTTTTGA TTTTTATCGA ACAAATCGAT TTGGTATTAA TGAAAAATAT TACAAACTGG AATTAAAAAA CGCCCGAATT AGTGATATTA ATTTCTCGAT TGCGCATGTA GTCATTGACA GTGAAGCACA ACCTCAGGAA AGTATTTCTT TTATATATGA ATCCATAAAC TGGGAACACT GTATTGCCGG GACCAGTGCA TTCAGTTTAT GGGATGAGAG GGTGTTTTAG
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Protein sequence | MANLIYLTLN GEKQGLISAG CCSLDSIGNK AQLLHLDHIM VYELTHGLSR DQNVNHHSVT IKKPVDKSSP LLGKAINDNE ILTCTFDFYR TNRFGINEKY YKLELKNARI SDINFSIAHV VIDSEAQPQE SISFIYESIN WEHCIAGTSA FSLWDERVF
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