Gene SeD_A1215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1215 
Symbol 
ID6871066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp1205265 
End bp1206137 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content40% 
IMG OID642784394 
Productputative peptidoglycan-binding LysM 
Protein accessionYP_002215067 
Protein GI198245586 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value0.195146 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAAATC GCACAGCATC GGCACACAAA GGCATCCCAA CAACAGAAAA TCCGAGGGAA 
AGACCCCAGG TAAATACCCG GACAACAGGG AAAGGGTCTG GACACCCTCC CAAAAAACTC 
AGTCCTCTTG ATGAGTGGAA GGCTGGCCGG GAAAAAGCGA TTGGCAATCC TGACTGGTAT 
ATTTATGATA ATACAATCAG GAAACTTGTA TCTGAGATTA ATCGGCATTT ATCAACATCT 
AAAAACATCG AAAAATATAA GCCGCTGGAC TGGAAATTGA TTAAGGCAAT GATATGGACT 
GAAACAGGTG CGGCGGTAGC GGCGTGGAAA ACGAGACCAA TACAGATAGG AAACACAGGA 
GATGAAGGGA TCAAAGAAGT GGTTATTCCT GCTCGCCCTA GAAAGTACAA CATCATAATT 
CCGAAAACAT GGAACACATA TTTAATCAAT AAGACAGATC TTATAAGGAG CAATCCAGAA 
TATAACATCC GGGCGGGCAT TGCTCTTTTA ATGATAAAAA TGTCAGAAAC AGAAAAAGAT 
AAAATTGTTT ATGACAATGA AAATGAAGAT ACCTATGAAG TTGTTGAGGG TGATCGTGGT 
TATAGCTCCA TAGCCAAGAA AATAGGTACA ACACAGAGTG TTCTTACTAA ACTGAATGGC 
GTTAAAGTCA TTCACCCCGG AGATAAACTT AAGTATAAGA AAGCGCATCT GGAACAGTAT 
ATACCAGGAT GGCTTTTATT TACACCTGAA AACATTCAAA AACAATATAA TATAGACCCA 
ACAAAAGCAC AACCTGGTCA TAGAGGGGAT CACACCTATG CGGATAAAAT CAGATTCACA 
TACGCTCTCA TTGTCGCAGA TGAGAGTAAA TAA
 
Protein sequence
MVNRTASAHK GIPTTENPRE RPQVNTRTTG KGSGHPPKKL SPLDEWKAGR EKAIGNPDWY 
IYDNTIRKLV SEINRHLSTS KNIEKYKPLD WKLIKAMIWT ETGAAVAAWK TRPIQIGNTG 
DEGIKEVVIP ARPRKYNIII PKTWNTYLIN KTDLIRSNPE YNIRAGIALL MIKMSETEKD 
KIVYDNENED TYEVVEGDRG YSSIAKKIGT TQSVLTKLNG VKVIHPGDKL KYKKAHLEQY 
IPGWLLFTPE NIQKQYNIDP TKAQPGHRGD HTYADKIRFT YALIVADESK