Gene SeD_A1196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1196 
Symbol 
ID6875650 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1185008 
End bp1185646 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content55% 
IMG OID642784379 
ProductHTH-type transcriptional regulator RutR 
Protein accessionYP_002215052 
Protein GI198242495 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones73 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCAAC GCACAGAGAA AAAAATCGGG AAACGTTCGC AGGCCACCGG TGCAAAACGG 
CAGCTTATCT TAACCGCCGC GCTTGCCGTT TTTTCCCAGT ATGGCATTCA TGGCGCGCGT 
CTTGAACAGG TTGCCGAGCG GGCAGGCGTC TCCAAAACCA ATCTGCTTTA TTATTATCCC 
TCGAAAGAGG CGCTGTATGT CGCGGTAATG CGACAGATTC TGGATGTCTG GTTGGCGCCG 
CTCAAGGCGT TTCGCGCAGA ATCTTCCCCT CTGGAGGCCA TCAAAGAGTA TATCTGTCTC 
AAGCTGGAGG TTTCGCGTGA TTATCCGCAG GCGTCGCGGC TCTTCTGCAT GGAGATGCTG 
GCGGGCGCGC CGCTCTTAAT GGAGGAACTG ACCGGCGATC TAAAAGCGTT GATAGATGAA 
AAATCCGCGC TGATTGCCGG ATGGGTGCAC AGCGGGAAAC TGGCGCCCGT CTCCCCGCAC 
CATTTGATCT TCATGATTTG GGCCGCCACG CAACATTACG CCGATTTTGC CCCTCAGGTT 
GAGGCGGTAA CCGGCGCGAC GCTTCGCGAT GAAGCCTTTT TCAACCAAAC GGTCGAAAGC 
GTTCAGCGCA TTATTATTGA AGGGGTTCGC GTGCGTTAA
 
Protein sequence
MSQRTEKKIG KRSQATGAKR QLILTAALAV FSQYGIHGAR LEQVAERAGV SKTNLLYYYP 
SKEALYVAVM RQILDVWLAP LKAFRAESSP LEAIKEYICL KLEVSRDYPQ ASRLFCMEML 
AGAPLLMEEL TGDLKALIDE KSALIAGWVH SGKLAPVSPH HLIFMIWAAT QHYADFAPQV 
EAVTGATLRD EAFFNQTVES VQRIIIEGVR VR