Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1176 |
Symbol | |
ID | 6873926 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 1166719 |
End bp | 1168008 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 642784359 |
Product | 4-hydroxyphenylacetate degradation bifunctionalisomerase/decarboxylase |
Protein accession | YP_002215032 |
Protein GI | 198241961 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
TIGRFAM ID | [TIGR02303] 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit [TIGR02305] 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.220414 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 72 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGGTA CTGTTTTCGC CGTTGCGTTA AACCATCGCA GCCAGCTTGA TGCCTGGCAA GAGGCTTTCT CTCAGCCTCC CTATAATGCG CCGCCTAAAA CCGCAGTGTG GTTCATCAAG CCGCGTAATA CGGTGATTCG TCACGGCGAA CCCATTCCTT ATCCGCAGGG AGAAAAGGTA CTGAGCGGCG CGACAGTGGC GCTCATTGTG GGGAAAACCG CCAGCCGGAT ACGCTCTGAA GCGGCGGCGG ACTATATCGC CGGGTATGCG CTGGCTAACG AGGTCAGCCT GCCGGAAGAG AGCTTTTATC GCCCGGCGAT TAAAGCGAAA TGTCGCGATG GCTTTTGCCC GCTGGGTGAA ATGGCGCCGC TGAGTGATGT GGATAACCTC ACCATTATCA CGGAAATCAA CGGACGAGAA GCGGACCACT GGAATACTGC CGATTTACAG CGTAGCGCCG CACAGCTGCT TAGCGCGTTA AGTGAGTTCG CTACGCTTAA CCCTGGCGAT GCGATCTTAC TCGGTACACC GCAGAATCGC GTTGCGCTGC GTCCCGGCGA TCGGGTGCGT ATTCTGGCGA AAGGTTTACC CGCTCTGGAA AATCCGGTTG TCGCAGAAGA TGAATTCGCC CGCAACCAGA CTTTTACGTG GCCGCTGTCA GCGACGGGTA CGTTATTTGC GTTGGGGTTG AACTACGCCG ATCACGCCAG CGAGCTGGCA TTTACGCCGC CGAAAGAGCC GCTGGTATTT ATCAAAGCGC CAAACACCTT TACCGAACAT CACCAAACGT CGGTGCGCCC GAACAACGTC GAATATATGC ACTATGAAGC CGAACTGGTC GTGGTGATTG GCAAAACGGC GCGTAAGGTG AGCGAAGCCG AAGCCATGGA GTATGTGGCC GGTTACACCG TCTGTAACGA CTACGCGATC CGCGACTATC TGGAAAACTA CTACCGTCCG AATCTGCGGG TAAAAAGCCG CGACGGCCTG ACGCCGATAG GCCCGTGGAT TGTGGATAAA GAGGCGGTTT CTGATCCGCA CAACCTGACG TTACGCACCT TTGTCAACGG TGAGCTGCGC CAGGAAGGGA CGACCGCCGA TCTGATCTTC AGCATCCCGT TCCTGATTTC TTATCTGAGC GAATTTATGA CGTTGCAACC GGGCGACATG ATTGCCACCG GTACGCCGAA AGGGCTGTCC GATGTGGTGC CGGGGGATGA AGTTGTCGTG GAAGTAGAAG GCGTGGGTCG CCTGGTTAAC CGAATCGTCA GTGAGGAGAG CGCAAAATGA
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Protein sequence | MKGTVFAVAL NHRSQLDAWQ EAFSQPPYNA PPKTAVWFIK PRNTVIRHGE PIPYPQGEKV LSGATVALIV GKTASRIRSE AAADYIAGYA LANEVSLPEE SFYRPAIKAK CRDGFCPLGE MAPLSDVDNL TIITEINGRE ADHWNTADLQ RSAAQLLSAL SEFATLNPGD AILLGTPQNR VALRPGDRVR ILAKGLPALE NPVVAEDEFA RNQTFTWPLS ATGTLFALGL NYADHASELA FTPPKEPLVF IKAPNTFTEH HQTSVRPNNV EYMHYEAELV VVIGKTARKV SEAEAMEYVA GYTVCNDYAI RDYLENYYRP NLRVKSRDGL TPIGPWIVDK EAVSDPHNLT LRTFVNGELR QEGTTADLIF SIPFLISYLS EFMTLQPGDM IATGTPKGLS DVVPGDEVVV EVEGVGRLVN RIVSEESAK
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