Gene SeD_A1074 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1074 
Symbol 
ID6872825 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp1078187 
End bp1079527 
Gene Length1341 bp 
Protein Length446 aa 
Translation table11 
GC content49% 
IMG OID642784259 
Productintegrase 
Protein accessionYP_002214933 
Protein GI198243350 
COG category[L] Replication, recombination and repair 
COG ID[COG0582] Integrase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.0000184312 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAAGCA GTACACTCGT CAATGCTCCT GGACGTCAGG AGGGATTAAT GGCTAATGCA 
TCATACCCGA CAGGCGTCGA AAACCACGGC GGTTCGCTCC GCATCTGGTT TCTGTATAAA 
GGTAAACGTG TCAGGGAAAA CCTTGGTATC CCTGACACTG CAAAAAATCG CAAGATAGCT 
GGCGAACTGC GTTCTTCGGT TTGTTTTGCG ATAAGGATGG GGAATTTTAA CTATGTGGAA 
AAATTCCCAA ACTCACCGAA CCTTGCCCGG TTCGGTCAGG ATAGAAAGGA AATTACTGTG 
CTGGAGCTTA CCGAAAGATG GTCCGAGCTG AAGAGAATGG AGATCAGCTC TAATACCATG 
AGTAGGTACG AATCTATCAT AAAAAACATG CTTCCACTCA TCGGCGAAAA CAAAATGGTT 
TCTGCGGTGA CTACTGAGGA TTTGCTGTAT GTCAGGAAGG AGTTGCTGAC GGGCTTTCAG 
GTAATGAAGA AGGATCACCG GACTCAGGTT AAAGGCCGGA AATCGTCCAC AGTGAATAAT 
TACATGATGC TGATGGCCGA GATCTTCCAG TTTGGAACAG ATAACGGCTA TGCAAAGGAA 
AACCCGTTTA GCGGAATTAA CCGTCTCAAG AAAGCGAAAG GGGAACCAGA TCCACTCACG 
ACAGACGAGT TCATCAGGTT TATCCAGGCA TGCGGACACC AGCAGATGAG AAATCTCTGG 
TCACTGGCAG TCTATACCGG AATGAGGCAT GGGGAGTTGT GCGGTCTGGC CTGGGAAGAT 
ATCGATCTGC ATGCCGGGAC GATCATTGTG AAGCGCAACC TTACCCAGAC GGATGAGTTC 
ACCCTGCCAA AAACCAACGC AGGTACTGAC AGGGTGATAT ATCTCATTCA ACCAGCTATT 
GATGCCCTGA GGAATCAGGC CCAGTTGACA CGCCTTGGCC GGCAGTTTGA GGTTGAAGTG 
AAGTTGCGGG AATATGGACA ATCTGTCATT CAGCCCTGCA CGTTCGTATT CAGCCCTCAA 
TGCGTCAAAC GTGGACCTCG CACAGGATAT CACTACGCGG TTAATTCCAT TAATAAAATT 
TGGGCCCCGA TAATCAAGCG TGCCGGCATT CGTTACCGTA ACGCGTATCA GTCACGACAT 
ACCTATGCAT GCTGGTCATT ATCAGCTGGT GCTAACCCAA ACTTTATAGC AACGCAGATG 
GGGCATACCG ATGCACAGAT GGTTTACAAG GTGTATGGAA AGTGGATGTC AGAGAAGAGC 
GCAGAACAGG TTTCTCTGCT CAACCAGGCA CTTTCCCGCT ATGCCCCATC ACTGCCCCAA 
AGCATGGTAG CAGCGCAGTA G
 
Protein sequence
MKSSTLVNAP GRQEGLMANA SYPTGVENHG GSLRIWFLYK GKRVRENLGI PDTAKNRKIA 
GELRSSVCFA IRMGNFNYVE KFPNSPNLAR FGQDRKEITV LELTERWSEL KRMEISSNTM 
SRYESIIKNM LPLIGENKMV SAVTTEDLLY VRKELLTGFQ VMKKDHRTQV KGRKSSTVNN 
YMMLMAEIFQ FGTDNGYAKE NPFSGINRLK KAKGEPDPLT TDEFIRFIQA CGHQQMRNLW 
SLAVYTGMRH GELCGLAWED IDLHAGTIIV KRNLTQTDEF TLPKTNAGTD RVIYLIQPAI 
DALRNQAQLT RLGRQFEVEV KLREYGQSVI QPCTFVFSPQ CVKRGPRTGY HYAVNSINKI 
WAPIIKRAGI RYRNAYQSRH TYACWSLSAG ANPNFIATQM GHTDAQMVYK VYGKWMSEKS 
AEQVSLLNQA LSRYAPSLPQ SMVAAQ