Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1062 |
Symbol | |
ID | 6874597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 1067667 |
End bp | 1068314 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642784247 |
Product | hydroxyacylglutathione hydrolase |
Protein accession | YP_002214921 |
Protein GI | 198246004 |
COG category | [R] General function prediction only |
COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 0.00136718 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAACTATC GTATTATTCC GGTCACCGCG TTCTCCCAGA ACTGTTCATT AATCTGGTGC GAACAAACCC GGCTGGCGGC GCTGGTCGAT CCGGGCGGCG ACGCGGAAAA AATTAAACAG GAAGTGGACG CCAGCGGCGT GACGTTGATG CAAATTTTAC TCACGCATGG GCATCTCGAT CATGTCGGCG CGGCGAGTGA ACTGGCGCAG CATTACGGCG TTCCTGTTAT CGGTCCGGAA AAAGAAGATG AGTTCTGGCT GCAAGGACTG CCGGCGCAAA GCCGCATGTT TGGTCTGGAT GAGTGTCAGC CGCTGACGCC TGATCGCTGG CTGAACGACG GCGATCGCGT CAGCGTAGGG AATGTGACGT TACAGGTGTT ACATTGTCCG GGACACACGC CGGGACACGT GGTTTTCTTT GATGAACAGT CGCAACTGCT GATCTCCGGC GATGTGATTT TCAAAGGTGG CGTCGGGCGC AGCGATTTTC CTCGCGGCGA TCACACCCAG TTGATTGACG CCATTAAGCG TAAATTATTG CCGCTTGGCG ATGATGTGAC CTTTATTCCT GGCCACGGCC CGCTCTCTAC GCTCGGATAC GAGCGTCTGC ATAATCCCTT CCTGCAAGAT GAGATGCCGG TCTGGTAA
|
Protein sequence | MNYRIIPVTA FSQNCSLIWC EQTRLAALVD PGGDAEKIKQ EVDASGVTLM QILLTHGHLD HVGAASELAQ HYGVPVIGPE KEDEFWLQGL PAQSRMFGLD ECQPLTPDRW LNDGDRVSVG NVTLQVLHCP GHTPGHVVFF DEQSQLLISG DVIFKGGVGR SDFPRGDHTQ LIDAIKRKLL PLGDDVTFIP GHGPLSTLGY ERLHNPFLQD EMPVW
|
| |