| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1048 |
|---|
| Symbol | |
|---|
| ID | 6873153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 1048158 |
|---|
| End bp | 1050371 |
|---|
| Gene Length | 2214 bp |
|---|
| Protein Length | 737 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642784233 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002214907 |
|---|
| Protein GI | 198244225 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) |
|---|
| TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein
[TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 0.486822 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATATTGC CAGTATTACC TGATACGTGG ATTCTCGCGG TGCTGTTTTG TCTGGCATGT
TTGCTTTGCC TCATACCCCA TCACTATGCG CGCTACGCGG CATTAACCTT GCTCTTTTTC
ATATGGGGGA TATTTGCCGC CAGGCAGGCC ATCTGGGCGG GAAACGTCCT GCCCGCCGCG
ACGCAGGAGG CGACAGTCGT CATTACTGCC ACCGATCATA TGACCACTCA TTATGGGCGA
ATCACCCATT TGCGCGGAAA GCCGCTCTTT CCTGCTGTAG GGATTGTCCT GCATGGCCAG
TACTTACCCA CGGAAGTGTG TGCCGGGCAA CAGTGGGCGA TGACGCTGAA GGTCAGAGCG
GTACACGGAC AGCTTAACGA AGGCGGTTTT GATAGCCAGC GTTACGCGCT AGCGCAGCAC
CAACCGTTGA CCGGGCGTTT TCTACAGGCT AAAGCGATTA ACCCTGAGTG TAGCTTGCGT
GGGCGCTATC TTGCTTCGCT TCGCGCTACG CTTGCGCCTT ATCCGTGGCA GCAGGTTATT
CTGGCGTTGG GAATGGGGGA GCGGGGAGCG GTGTCGCAGG AGGTGAAGGC CGTTATGCGC
GATACGGGGA CTGCCCATTT GATGGCGATT TCCGGCCTGC ATATCGCTTT TGCTGCGTTA
TTGGCTGCCG GATTAATCCG TGGCGGACAA TTCTTTTTGC CGGTCAGATG GATTCGTTGG
CAGACGCCAT TGCTGGGCGG CATTCTTTGC GCGATATGTT ATGCCTGGCT TACCGGCTTA
CAACCGCCTG CGCTGCGCAC GGTGGCGGCA CTGAGCGTCT GGGGAGGATT AAAATTAAGC
GGACGACAGT GGAGCGGCTG GCAAGTCTGG TGCTGCTGTC TGGCCGCGAT TATTTTCGCC
GATCCTGTGG CGGTTATATC ACAAAGTCTT TGGCTGTCAG CATTTGCGGT TGCCGGCCTG
TTATTCTGGT ATCAGTGGTT TCCTGCGCCA AACGGAAATT TTCCACGAGG CTTACGCTGG
TTGCTTAACC TGCTTCACCT ACAGGCAGGC ATTACACTTC TGCTTTTGCC TCTCCAGGTG
GCGCTTTTTC ATGGCATAAG CGTTACCGCA ATGCTGGCGA ATCTTTTTGC CGTACCCTGG
GTCACATTTG TGACGGTTCC GCTCATCCTG GCGGGAATGA TTCTGCATTT AACCGGGCCG
TTTTTTCTTG AAGAGTGGGT ATGGTACCTG ACCGATCGCG CGTTAGCCGC GCTATTTTAC
CTGTTGAATG CTTTACCGCA GGGCTGGGTC AATATTGATA ACCGTTGGCA GTGGCTGACG
CTTTTACCCT GGCTAACGCT TATCGCGTGG CGATTAAACG TCTGGCGTAC CTGTCCGGCG
GTCTGTTTAT GCGGGTTATT GTTGATGAGC TGGCCACTCT GGCGGCCGAT AAACGCCAGC
GGATGGCAGG TGCATATGCT GGATGTCGGT CAGGGGCTGG CGATAGCGAT CGTCAGGGGC
GATAAAGTAA TACTCTACGA TACCGGTCGG GCATGGCCGG AGGGCGACAG CGGGCAACAG
GTTATTATTC CCTGGTTGCG CTGGCATAAT CTGACGCCGG AGGGCGTTAT TTTGAGTCAT
GAGCATCTGG ATCATCGGGG CGGGCTGCGT TCGCTACAGC GGGTCTGGCC GTCAATGTGG
ATTCGCAGCC CGTTAGGCTG GCAGGGACAT TTGCCCTGTT TTCGCGGCGA GCAGTGGCAA
TGGCAGGGGC TAACGTTTCA GGCGCACTGG CCGTTACGCG AAAGTGCCGA TCGAGGAAAT
AACCGTTCTT GTGTGGTCAA AGTGGATGAC GGTGTACATA GCATCCTGCT CACGGGCGAT
ATCGAAGCGG GCGCTGAACA AAAAATGCTA AGTCGTTACT GGCGACATCT TGCGGCGACG
TTTATCCAGG TGCCGCATCA TGGTAGTAAT ACGTCGTCGT CGCTACCATT TATTCAGCGC
GTACATGGTG AAGCGGCGCT GGCGTCCGCA TCGCGCTATA ACGCATGGCG GCTGCCGTCC
CGCAAGGTAA AACGGCGCTA CCGACAGCAG GCGTATCAGT GGTTTGATAC ACCCCACCAG
GGGCAAATTT CGCTGCTGTT TTCTCCGCAG GGCTGGCGCA TACAAGGCTT ACGGGATCAA
ATTTTACCTC GCTGGTATCA TCAGTGGTTT GGCGTGTCCG AGGATAACGG GTAG
|
|---|
| Protein sequence | MILPVLPDTW ILAVLFCLAC LLCLIPHHYA RYAALTLLFF IWGIFAARQA IWAGNVLPAA
TQEATVVITA TDHMTTHYGR ITHLRGKPLF PAVGIVLHGQ YLPTEVCAGQ QWAMTLKVRA
VHGQLNEGGF DSQRYALAQH QPLTGRFLQA KAINPECSLR GRYLASLRAT LAPYPWQQVI
LALGMGERGA VSQEVKAVMR DTGTAHLMAI SGLHIAFAAL LAAGLIRGGQ FFLPVRWIRW
QTPLLGGILC AICYAWLTGL QPPALRTVAA LSVWGGLKLS GRQWSGWQVW CCCLAAIIFA
DPVAVISQSL WLSAFAVAGL LFWYQWFPAP NGNFPRGLRW LLNLLHLQAG ITLLLLPLQV
ALFHGISVTA MLANLFAVPW VTFVTVPLIL AGMILHLTGP FFLEEWVWYL TDRALAALFY
LLNALPQGWV NIDNRWQWLT LLPWLTLIAW RLNVWRTCPA VCLCGLLLMS WPLWRPINAS
GWQVHMLDVG QGLAIAIVRG DKVILYDTGR AWPEGDSGQQ VIIPWLRWHN LTPEGVILSH
EHLDHRGGLR SLQRVWPSMW IRSPLGWQGH LPCFRGEQWQ WQGLTFQAHW PLRESADRGN
NRSCVVKVDD GVHSILLTGD IEAGAEQKML SRYWRHLAAT FIQVPHHGSN TSSSLPFIQR
VHGEAALASA SRYNAWRLPS RKVKRRYRQQ AYQWFDTPHQ GQISLLFSPQ GWRIQGLRDQ
ILPRWYHQWF GVSEDNG
|
|---|
| |