Gene SeD_A1042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1042 
SymbolaroA 
ID6874734 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1042607 
End bp1043890 
Gene Length1284 bp 
Protein Length427 aa 
Translation table11 
GC content54% 
IMG OID642784228 
Product3-phosphoshikimate 1-carboxyvinyltransferase 
Protein accessionYP_002214902 
Protein GI198246031 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0128] 5-enolpyruvylshikimate-3-phosphate synthase 
TIGRFAM ID[TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.195117 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value0.218839 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATCCC TGACGTTACA ACCCATCGCG CGGGTCGATG GCGCCATTAA TTTACCTGGC 
TCCAAAAGTG TTTCAAACCG TGCTTTGCTC CTGGCGGCTT TAGCTTGTGG TAAAACCGTT
CTGACGAATC TGCTGGATAG CGATGACGTC CGCCATATGC TCAATGCCCT GAGCGCGTTG
GGGATCAATT ACACCCTTTC TGCCGATCGC ACCCGCTGTG ATATCACGGG TAATGGCGGC
CCATTACGTG CGCCAGGCGC TCTGGAACTG TTTCTCGGTA ATGCCGGAAC CGCGATGCGT
CCGTTAGCGG CAGCGCTATG TCTGGGGCAA AATGAGATAG TGTTAACCGG CGAACCGCGT
ATGAAAGAGC GTCCGATAGG CCATCTGGTT GATTCGCTGC GTCAGGGCGG GGCGAATATT
GATTACCTGG AGCAGGAAAA TTATCCGCCC CTGCGTCTGC GCGGCGGTTT TATCGGCGGC
GACATTGAGG TTGATGGTAG CGTTTCCAGC CAGTTCCTGA CCGCTCTGCT GATGACGGCG
CCGCTGGCCC CTAAAGACAC AATTATTCGC GTTAAAGGTG AACTGGTATC AAAACCTTAC
ATCGATATCA CGCTAAATTT AATGAAAACC TTTGGCGTGG AGATAGCGAA CCACCACTAC
CAACAATTTG TCGTGAAGGG AGGTCAACAG TATCACTCTC CAGGTCGCTA TCTGGTCGAG
GGCGATGCCT CGTCAGCGTC CTATTTTCTC GCCGCCGGGG CGATAAAAGG CGGCACGGTA
AAAGTGACCG GAATTGGCCG CAAAAGTATG CAGGGCGATA TTCGTTTTGC CGATGTGCTG
GAGAAAATGG GCGCGACCAT TACCTGGGGC GATGATTTTA TTGCCTGCAC GCGCGGTGAA
TTGCACGCCA TAGATATGGA TATGAACCAT ATTCCGGATG CGGCGATGAC GATTGCCACC
ACGGCGCTGT TTGCGAAAGG AACCACGACG TTGCGCAATA TTTATAACTG GCGAGTGAAA
GAAACCGATC GCCTGTTCGC GATGGCGACC GAGCTACGTA AAGTGGGCGC TGAAGTCGAA
GAAGGGCACG ACTATATTCG TATCACGCCG CCGGCGAAGC TCCAACACGC GGATATTGGC
ACGTACAACG ACCACCGTAT GGCGATGTGC TTCTCACTGG TCGCACTGTC CGATACGCCA
GTTACGATCC TGGACCCTAA ATGTACCGCA AAAACGTTCC CTGATTATTT CGAACAACTG
GCGCGAATGA GTACGCCTGC CTAA
 
Protein sequence
MESLTLQPIA RVDGAINLPG SKSVSNRALL LAALACGKTV LTNLLDSDDV RHMLNALSAL 
GINYTLSADR TRCDITGNGG PLRAPGALEL FLGNAGTAMR PLAAALCLGQ NEIVLTGEPR
MKERPIGHLV DSLRQGGANI DYLEQENYPP LRLRGGFIGG DIEVDGSVSS QFLTALLMTA
PLAPKDTIIR VKGELVSKPY IDITLNLMKT FGVEIANHHY QQFVVKGGQQ YHSPGRYLVE
GDASSASYFL AAGAIKGGTV KVTGIGRKSM QGDIRFADVL EKMGATITWG DDFIACTRGE
LHAIDMDMNH IPDAAMTIAT TALFAKGTTT LRNIYNWRVK ETDRLFAMAT ELRKVGAEVE
EGHDYIRITP PAKLQHADIG TYNDHRMAMC FSLVALSDTP VTILDPKCTA KTFPDYFEQL
ARMSTPA