Gene SeD_A1033 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1033 
Symbol 
ID6874383 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1030947 
End bp1032368 
Gene Length1422 bp 
Protein Length473 aa 
Translation table11 
GC content48% 
IMG OID642784218 
Productinner membrane transporter YcaM 
Protein accessionYP_002214892 
Protein GI198244368 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0531] Amino acid transporters 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value0.843228 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGAATG TGCAGGAAAA ACAGTTGCGA TGGTACAACA TCGCCCTGAT GTCGTTTATT 
ACCGTTTGGG GATTCGGCAA TGTTGTCAAT AACTATGCTA ACCAGGGGTT AGTGGTTGTC 
TTCTCCTGGG TGTTTATTTT TGCGCTCTAT TTCATTCCTT ATGCCTTAAT CGTGGGGCAA 
CTGGGCTCAA CCTTCAAAGA GGGAAAAGGG GGCGTCAGTA CCTGGATTAA GCATACGATG 
GGGCCGGGGT TGGCTTACCT TGCGGCATGG ACCTATTGGG TCGTGCATAT TCCCTACCTG 
GCGCAAAAGC CGCAGGCGAT ACTCATTGCA TTGGGATGGG CTTTAAAAGG CGACGGCTCG 
TTGATAAAAG AATATACCGT CGTTGCCTTG CAGGGGCTGA CGCTGGCATT GTTTGTTTTC 
TTTATGTGGG TTGCTTCCCG GGGGATGAAA TCGCTAAAGG TTGTTGGGTC TGTGGCCGGG 
ATTGCCATGT TTATCATGTC AATTTTATAT GTTGTGATGG CAGTGACCGC GCCAGCAATT 
ACAAACGTTG AAATTGCGAC CACTAACATC ACCTGGCAGT CATTTATTCC TCATATCGAT 
TTTACCTATA TCACCACCAT CTCTATGTTG GTCTTTGCGG TTGGTGGGGC AGAGAAGATC 
TCGCCTTATG TCAACCAGAC GCGGAATCCA GGAAAAGAAT TTCCGAAGGG GATGCTCTTT 
TTAGCCGTCA TGGTTGCGGT CTGCGCTATC CTCGGTTCGT TGGCGATGGG AATGATGTTT 
GATTCGCGGC ATATACCTGA CGATTTAATG ACTAATGGGC AATATTATGC ATTCCAGAAA 
TTGGGTGAGT ATTACCATAT GGGTAATTCA TTAATGGTGA TTTATGCCAT TGCCAATACT 
CTGGGGCAAA TCGCCGCGCT GGTGTTTTCT ATTGATGCGC CACTGAAAGT TTTACTGGGT 
GATGCAGACA CTAAATATAT CCCGCAGCGC TTATGTCGTA CTAACGCTTC AGGTACGCCT 
GTTAACGGTT ATTTGCTGAC ATTAGTGTTG GTCGCTATCT TGATTATGTT GCCAACGCTT 
GGCATCGGCG ATATGAACAA CCTGTACAAA TGGCTGCTTA ATCTCAATTC AGTCGTTATG 
CCGCTGCGCT ATCTGTGGGT ATTTGTCGCC TTTATTGCCG TCATTCGACT GGCGCAAAAG 
TACAAACCCG AATATGTGTT TATTCGCAAC CGGGCGTTGG CGTTAACTGT GGGAATATGG 
TGTTTTGCCT TCACCGCGTT TGCCTGCCTT ACCGGTATTT TCCCCAAAAT GGAGGCGTTC 
ACGCCGGAGT GGACATTCCA GCTGACGTTG AACATCGTGA CGCCTTTTGT CCTGGTCGGG 
TTGGGATTAA TTTTCCCACT GCTGGCGCGT AGAAACACAT AA
 
Protein sequence
MPNVQEKQLR WYNIALMSFI TVWGFGNVVN NYANQGLVVV FSWVFIFALY FIPYALIVGQ 
LGSTFKEGKG GVSTWIKHTM GPGLAYLAAW TYWVVHIPYL AQKPQAILIA LGWALKGDGS 
LIKEYTVVAL QGLTLALFVF FMWVASRGMK SLKVVGSVAG IAMFIMSILY VVMAVTAPAI 
TNVEIATTNI TWQSFIPHID FTYITTISML VFAVGGAEKI SPYVNQTRNP GKEFPKGMLF 
LAVMVAVCAI LGSLAMGMMF DSRHIPDDLM TNGQYYAFQK LGEYYHMGNS LMVIYAIANT 
LGQIAALVFS IDAPLKVLLG DADTKYIPQR LCRTNASGTP VNGYLLTLVL VAILIMLPTL 
GIGDMNNLYK WLLNLNSVVM PLRYLWVFVA FIAVIRLAQK YKPEYVFIRN RALALTVGIW 
CFAFTAFACL TGIFPKMEAF TPEWTFQLTL NIVTPFVLVG LGLIFPLLAR RNT