Gene SeD_A1021 details

Gene Information

• Locus tag: SeD_A1021
• Symbol: cydC
• ID: 6874856
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
• Kingdom: Bacteria
• Replicon accession: NC_011205
• Strand: -
• Start bp: 1011689
• End bp: 1013410
• Gene Length: 1722 bp
• Protein Length: 573 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 642784206
• Product: cysteine/glutathione ABC transporter membrane/ATP-binding component
• Protein accession: YP_002214880
• Protein GI: 198245775
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4987] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components
• TIGRFAM ID: [TIGR02868] thiol reductant ABC exporter, CydC subunit

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.000555337
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 71
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGCGCGC TACTCCCTTA TCTGACGCTT TATAAACGCC ACAAATGGAT GCTAACGCTG 
GGAATTGCGC TGGCAATCCT GACCCTGCTT GCCAGTATCG GGCTGCTGAC GCTTTCCGGC 
TGGTTCCTGT CCGCGTCCGC TATCGCAGGC TTCGCGGGAA TTTACAGTCT TAACTATATG 
CTCCCGGCGG CCGGCGTGCG CGGCGCGGCC ATTACCCGTA CCGCCGGTCG TTATTTTGAA 
CGTCTGGTAA GTCATGACGC CACGTTCCGC GTGCTGCAAC ATCTGCGTAT TTATACCTTC 
AGCAAACTTT TACCGCTCTC CCCCGCGGGT CTGGCGCGTT ATCAGCAAGG TGAACTGCTG 
AACCGCATCG TTGCCGACGT CGACACGCTG GACCATCTCT ATTTGCGCGT CATCTCCCCG 
CTGGTCGGCG CTTTTGTAGT GATTATGATT GTCACCCTGG GGCTTAGCGT TCTCGACGTG 
ACGCTGGCGA TCACGCTGGG CGGCATTATG CTGTTGACGC TGTTTATTAT GCCGCCGGTG 
TTTTATCGCG CCGGCAAAAA TACCGGCCAA AATCTGACGC ATCTACGAGG TCAGTATCGC 
CAGCAGCTCA CGTCATGGTT ACAGGGCCAG GCGGAACTCA CCATTTTTGG CGCCAGCAAA 
CGCTATCGGG CGCAAATGGA AGCCACCGAA TTACAATGGC ATGAGGCCCA ACGCCGACAG 
TCTGAACTCA CCGCCTTATC GCAGGCGTTA ATGCTGCTGA TTGGTGCGCT GGCGGTGATG 
TTAATGTTGT GGATGGCCTC CGGCGGCGTT GGCGGCAATA CGCAGCCCGG CGCGCTCATC 
GCGCTGTTTG TCTTCTGCGC GCTGGCGGCT TTCGAGGCGC TTGCGCCCGT TACCGGCGCA 
TTCCAGCATC TGGGGCAGGT TATCGCCTCT GCGCTTCGTA TCACTGAATT AACGGAGCAA 
AAACCGGAGG TGACCTTTCC GCAAGCAGAA ACTCCCGCGC CGGAAAAGGT CACACTCACC 
CTGCGGGACG TTTCGTTTCG TTATCCCGAC CAGCCGATTA ATGCGCTCAA TGCCCTCTCA 
TTACAGGCTA ATCCTGGCGA GCATGTCGCT ATTCTGGGGC GTACCGGCTG CGGAAAATCA 
ACGCTGTTGC AGCTACTCAC CCGCGCCTGG GACCCGCAAC AAGGCGAAAT TCTGCTCAAC 
GATCTTCCGC TATCCTCGCT GAGCGAATCC GCCTTACGCC GGACTATCAG CGTGGTGCCG 
CAGCGTGTCC ACCTGTTCAG CGCCACGCTG CGTGATAATT TATTACTGGC GGCGCCCAAT 
GCCAGCGACG AAGCCCTTTC CGACATGCTG CGTCGCGTCG GCCTCGAAAA TCTGCTCGAA 
GATAGTGGGC TTAATAGCTG GCTCGGCGAA GGCGGTCGTC TGCTATCCGG CGGCGAACTT 
CGTCGCCTGG CCATCGCCCG CGCGCTGTTG CACGATGCCC CGTTGATGCT GTTGGATGAG 
CCTACTGAGG GGCTGGATGC GACCACCGAG AGCGAAATGC TGGAATTACT TGCCGATGTG 
ATGCGCGAGA AAACCATCCT GATGGTGACT CACCGTTTGC GCGGCCTGGC CCGTTTTGAT 
CAAATCATCG TAATGGACGA CGGGCGCATC ATTGAGCGAG GCACTCATGC AGAATTGTTA 
GCCGGACAAG GGCGCTATTA TCAGTTTAAA CAACGTCTGT AA 

 

Protein sequence

MRALLPYLTL YKRHKWMLTL GIALAILTLL ASIGLLTLSG WFLSASAIAG FAGIYSLNYM 
LPAAGVRGAA ITRTAGRYFE RLVSHDATFR VLQHLRIYTF SKLLPLSPAG LARYQQGELL 
NRIVADVDTL DHLYLRVISP LVGAFVVIMI VTLGLSVLDV TLAITLGGIM LLTLFIMPPV 
FYRAGKNTGQ NLTHLRGQYR QQLTSWLQGQ AELTIFGASK RYRAQMEATE LQWHEAQRRQ 
SELTALSQAL MLLIGALAVM LMLWMASGGV GGNTQPGALI ALFVFCALAA FEALAPVTGA 
FQHLGQVIAS ALRITELTEQ KPEVTFPQAE TPAPEKVTLT LRDVSFRYPD QPINALNALS 
LQANPGEHVA ILGRTGCGKS TLLQLLTRAW DPQQGEILLN DLPLSSLSES ALRRTISVVP 
QRVHLFSATL RDNLLLAAPN ASDEALSDML RRVGLENLLE DSGLNSWLGE GGRLLSGGEL 
RRLAIARALL HDAPLMLLDE PTEGLDATTE SEMLELLADV MREKTILMVT HRLRGLARFD 
QIIVMDDGRI IERGTHAELL AGQGRYYQFK QRL