Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1011 |
Symbol | cspD |
ID | 6873117 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 1003213 |
End bp | 1003434 |
Gene Length | 222 bp |
Protein Length | 73 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642784196 |
Product | cold shock domain-containing protein CspD |
Protein accession | YP_002214871 |
Protein GI | 198245012 |
COG category | [K] Transcription |
COG ID | [COG1278] Cold shock proteins |
TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.725964 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 88 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAACGG GTACTGTAAA GTGGTTCAAC AATGCCAAAG GGTTTGGTTT CATCTGCCCT GAAGGCGGCG GCGAGGATAT TTTCGCCCAT TATTCCACCA TTCAAATGGA TGGTTACAGA ACGCTTAAAG CCGGACAGTC TGTCCGGTTT GATGTCCACC AGGGGCCAAA AGGCAATCAC GCCAGCGTCA TCGTGCCCAT CGAAGCAGAG GCCGTTGCAT AG
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Protein sequence | METGTVKWFN NAKGFGFICP EGGGEDIFAH YSTIQMDGYR TLKAGQSVRF DVHQGPKGNH ASVIVPIEAE AVA
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