| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0982 |
|---|
| Symbol | |
|---|
| ID | 6875543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 972517 |
|---|
| End bp | 973632 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642784167 |
|---|
| Product | putrescine transporter subunit: periplasmic-binding component of ABC superfamily |
|---|
| Protein accession | YP_002214842 |
|---|
| Protein GI | 198245718 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.156512 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 88 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACCG CCTTAAAGAA AAAATGGCTA TCGGGTCTGG TTGCGGGTGC TCTGATGGTC
GTCTCTGTCG GCACGCTCGC TGCCGAACAA AAAACGCTGC ACATTTATAA CTGGTCAGAT
TATATCGCGC CGGACACGGT GGCGAACTTT GAAAAAGAGA CCGGGATTAA CGTTATCTAT
GATGTCTTTG ACTCTAACGA AGTGCTGGAA GGCAAGTTAA TGGCAGGCAG CACCGGGTTC
GATCTGGTGG TGCCATCGGC CAGTTTTCTT GAGCGCCAGC TCACCGCGGG CGTTTTTCAG
CCGCTGGATA AAAGCAAACT TCCCGGCTGG AAAAACCTCG ATCCTGAACT GTTGAAACTG
GTAGCGAAGC ACGATCCTGA CAACAAATAC GCCATGCCCT ATATGTGGGC CACGACGGGC
ATTGGCTATA ACGTTGATAA AGTGAAAGCG GTGCTGGGGG ATGATGCGCC AGTGAATAGC
TGGGATTTAG TCCTCAAGCC GGAGAATCTG GAGAAGCTAA AAAGCTGCGG CGTCTCTTTC
CTTGATGCGC CTGAAGAAAT TTTTGCCACC GTGCTGAACT ATCTGGGTAA AGATCCGAAT
AGCAGCAAAG CGGATGACTA CACCGGCCCG GCAACCGATC TGTTGTTGAA GCTACGGCCA
AACATTCGCT ATTTCCACTC CTCGCAATAC ATTAACGATC TGGCTAATGG CGATACCTGT
GTAGCCATCG GCTGGGCGGG CGATGTCTGG CAGGCCGCTA ACCGGGCGAA AGAGGCGAAA
AATGGCGTCA ATATCTCTTT CTCGATCCCC AAAGAGGGGG CAATGGCGTT TTTTGATGTG
TTTGCCATGC CGGCTGACGC CAAAAATAAA GACGAGGCCT ACCAGTTCCT TAATTATCTG
CTGCGCCCTG ATGTGATTGC CCATATTTCC GATCACGTTT TCTACGCCAA TGCGAATAAA
GAGGCGACGG CGCTGGTCAG CCAGCAGGTG CGCGATAACC CGGGAATTTA TCCGCCGGCG
GATGTGCGGG CCAAGTTGTT TACCCTGAAA GTGCAGGAGC CGAAGATTGA TCGCGTCCGC
ACCCGCGCAT GGACGAAGGT GAAAAGCGGT AAGTAA
|
|---|
| Protein sequence | MMTALKKKWL SGLVAGALMV VSVGTLAAEQ KTLHIYNWSD YIAPDTVANF EKETGINVIY
DVFDSNEVLE GKLMAGSTGF DLVVPSASFL ERQLTAGVFQ PLDKSKLPGW KNLDPELLKL
VAKHDPDNKY AMPYMWATTG IGYNVDKVKA VLGDDAPVNS WDLVLKPENL EKLKSCGVSF
LDAPEEIFAT VLNYLGKDPN SSKADDYTGP ATDLLLKLRP NIRYFHSSQY INDLANGDTC
VAIGWAGDVW QAANRAKEAK NGVNISFSIP KEGAMAFFDV FAMPADAKNK DEAYQFLNYL
LRPDVIAHIS DHVFYANANK EATALVSQQV RDNPGIYPPA DVRAKLFTLK VQEPKIDRVR
TRAWTKVKSG K
|
|---|
| |