Gene SeD_A0972 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0972 
Symbol 
ID6871167 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp964729 
End bp965940 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content57% 
IMG OID642784158 
Productinner membrane protein YbjJ 
Protein accessionYP_002214833 
Protein GI198242546 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0738] Fucose permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.929819 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones84 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGTCC TCTCCTCACG TAACGCCTTA AAACGCCGTA CCTGGGCGCT GTTTATGTTC 
TTCTTTTTAC CCGGACTGCT GATGGCCTCC TGGGCAACCC GAACGCCTGC TATTCGGGAT 
ATTCTTTCCG TCTCTACCGC GGAAATGGGG GCGGTCTTAT TCGGGCTTTC TATCGGTTCA 
ATGAGCGGTA TTCTTTGTTC CGCCTGGCTG GTGAAACGAT TTGGCACCCG GAAGGTTATT 
CGCATGACGA TGACCTGCGC AGTAGGCGGG ATGGTTATTC TTAGCGTCGC GCTGTGGTGC 
GCCTCGCCGC TGATTTTTGC CCTTGGATTA GCCGTTTTCG GCGCCAGTTT TGGCGCCGCC 
GAAGTGGCGA TTAATGTCGA AGGCGCGGCG GTCGAACGCG AGCTGAATAA AACCGTTCTG 
CCGATGATGC ATGGTTTTTA CAGTTTCGGC ACGCTGGCGG GCGCTGGTGT CGGCATGGCG 
TTAACCGCAT TAAGCGTCCC GGCTAACATC CATATCATCC TCGCGGCTGC CGTGGCGATC 
GCGCCCATTT TCATCGCCAT TCGGGCGATC CCTGACGGTA CGGGTAAAAA CGCATCGGAA 
GATTCTCACC TTCAGGAAAA AGGATTACCT TTTTATCGGG ACATCCAGCT TTTGCTTATT 
GGCGTGGTGG TGCTGGCAAT GGCATTCGCC GAAGGATCTG CGAATGACTG GCTACCGCTA 
CTGATGGTAG ACGGACACGG TTTTAGCCCA ACCTCCGGCT CTCTGATCTA CGCCGGTTTC 
ACGCTTGGTA TGACCGTTGG CCGCTTTACC GGCGGCTGGT TTATTGACCG CTATAGCCGG 
GTGACGGTTG TTCGCGCCAG CGCGTTGATG GGAGCGTTGG GCATTGGCCT GATTATTTTT 
GTCGATAGCG ACTGGGTCGC CGGCGTCTCG GTCATTCTTT GGGGCTTAGG CGCTTCGCTC 
GGCTTCCCGC TGACCATTTC CGCCGCCAGC GATACCGGTC CCGACGCGCC GACGCGCGTG 
AGCGTTGTCG CCACGACCGG CTATCTGGCG TTTTTGGTCG GGCCGCCGCT GTTGGGCTAT 
CTGGGAGAGC ATTATGGATT ACGCAGCGCC ATGATGGTTG TGCTGGCGCT GGTTATTCTG 
GCGGCGCTGG TGGCGAAGGC CGTCGCCAAA CCTGTATCGA CTCCGCAACC GGTGATGGAG 
CATAACGCAT GA
 
Protein sequence
MTVLSSRNAL KRRTWALFMF FFLPGLLMAS WATRTPAIRD ILSVSTAEMG AVLFGLSIGS 
MSGILCSAWL VKRFGTRKVI RMTMTCAVGG MVILSVALWC ASPLIFALGL AVFGASFGAA 
EVAINVEGAA VERELNKTVL PMMHGFYSFG TLAGAGVGMA LTALSVPANI HIILAAAVAI 
APIFIAIRAI PDGTGKNASE DSHLQEKGLP FYRDIQLLLI GVVVLAMAFA EGSANDWLPL 
LMVDGHGFSP TSGSLIYAGF TLGMTVGRFT GGWFIDRYSR VTVVRASALM GALGIGLIIF 
VDSDWVAGVS VILWGLGASL GFPLTISAAS DTGPDAPTRV SVVATTGYLA FLVGPPLLGY 
LGEHYGLRSA MMVVLALVIL AALVAKAVAK PVSTPQPVME HNA