Gene SeD_A0962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0962 
Symbol 
ID6872749 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp956148 
End bp957038 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content40% 
IMG OID642784150 
ProductLysR family transcriptional regulator 
Protein accessionYP_002214825 
Protein GI198243839 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.656034 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones75 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACTTTG ATATAAAAGA TTTAAAATTA TTCCTTGCTA TCAGTGAAGA AGGGAGCTTA 
ACACGTGGAG CGGAAAAAAC TTACATGTCT GCCGCATCTG GTAGCGTGCG TATACGTAAT 
CTTGAACAGA GTATCAATCT GAGATTGCTG TATCGTAGTA GCAAGGGGAT AACGTTATCC 
TCTGCTGGTG AAACATTTAA ACACCACGCC AGCCTTATTG TGAATCAGAT GGAAATGTTA 
CGTAGCGATA TGCAGGAGCA TGTTAAAGGC ATCAAAGGAC ATGTCAGAAT ATTTTCCAGT 
ATAACTGCTA TTGCAGAGTA TCTCCCCCCA TTGTTGAGCC ATTTCCTTAC ACTATATAAC 
GATGTGAATA TTGATCTCAG GGAGTATCCA AGTCCGGAAA TTGTACGTTC TGTTATTGAG 
GGGAAAACTG ATCTCGGAAT TGTTGCTGGT AATATTACAA CAGATAATCT TGAAATACTG 
CCGTTCCGTA CTGATAGGCT AGTGCTTATC ACCGCGACAG ACCATCCCTT TGCTGACAGA 
AAAAGCGTGA CCTTTCATGA ATTAATTCAA TATGAACAAA TCAGCCTGCC TGAAGGGACA 
GGAATGTTTG AATTTATCCG AAAAAAGGCA GAACTAGTAC CATCTAAACT GAAAATTAGA 
ATACAGGTCG GCAACTTTGA AACATTTTGC CGTATGGTTG AAGCAAAAGT GGGCATTGGT 
ATAATGCCTC ACTCTGCTGC ATCCCGTTTG CGTCAGTTGC ATGAATTTTC GATTATTGAT 
CTTGATGAAT TTTGGTCATT AAGAAAATTA CAAATCTGCG CCAGAAGCTT TGACAAATTA 
CCCGGTTTCA CACAAAAACT GGTTACTATG CTTACAGCTC AGACTGAGTG A
 
Protein sequence
MHFDIKDLKL FLAISEEGSL TRGAEKTYMS AASGSVRIRN LEQSINLRLL YRSSKGITLS 
SAGETFKHHA SLIVNQMEML RSDMQEHVKG IKGHVRIFSS ITAIAEYLPP LLSHFLTLYN 
DVNIDLREYP SPEIVRSVIE GKTDLGIVAG NITTDNLEIL PFRTDRLVLI TATDHPFADR 
KSVTFHELIQ YEQISLPEGT GMFEFIRKKA ELVPSKLKIR IQVGNFETFC RMVEAKVGIG 
IMPHSAASRL RQLHEFSIID LDEFWSLRKL QICARSFDKL PGFTQKLVTM LTAQTE