| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0844 |
|---|
| Symbol | tolB |
|---|
| ID | 6873726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 840724 |
|---|
| End bp | 842019 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642784039 |
|---|
| Product | translocation protein TolB |
|---|
| Protein accession | YP_002214718 |
|---|
| Protein GI | 198244972 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0211285 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAGC AGGCATTACG AGTAGCATTT GGTTTTCTGA TGCTGTGGGC GGCGGTGCTG
CACGCAGAAG TCCGTATCGA GATCACCCAG GGGGTGGACT CGGCGCGACC GATTGGCGTT
GTGCCTTTTA AATGGGCCGG GCCGGGCGCT GCGCCTGAAG ATATCGGCGG CATCGTGGCG
GCAGATTTAC GTAATAGCGG TAAATTTAAT CCGTTAGACC GGTCCCGACT GCCGCAGCAG
CCAGCCACCG CTCAGGAAGT TCAGCCTACC GCATGGTCTG CGCTGGGTAT TGATGCCGTC
GTCGTTGGGC AGGTAACGCC GAATCCGGAC GGTTCCTACA ATGTTGCTTA TCAGCTGGTT
GACACTGGCG GCGCGCCGGG GACTGTACTG GCGCAAAATT CTTATAAAGT GAACAAGCAG
TGGCTGCGTT ATGCAGGTCA TACCGCCAGT GACGAAGTCT TTGAAAAACT GACGGGCATT
AAGGGCGCGT TCCGTACTCG TATCGCCTAT GTGGTACAGA CTAATGGCGG TCAGTTCCCG
TATGAACTGC GTGTGTCGGA TTACGATGGT TACAATCAGT TTGTGGTGCA CCGTTCTCCG
CAGCCGTTGA TGTCTCCGGC GTGGTCTCCG GACGGCTCAA AACTGGCTTA CGTGACATTT
GAAAGCGGTC GCTCCGCGCT GGTTATCCAG ACGCTGGCAA ACGGCGCAGT GCGTCAGGTT
GCGTCCTTCC CGCGTCACAA CGGCGCGCCG GCCTTCTCGC CGGATGGGAC GAAACTGGCG
TTCGCGTTAT CGAAAACCGG AAGTCTGAAC CTGTACGTTA TGGATCTTGC TTCCGGCCAG
ATTCGTCAGA TAACGGACGG GCGTAGCAAC AATACGGAGC CGACCTGGTT CCCGGACAGC
CAGACTCTGG CCTTTACCTC TGACCAGGCT GGACGTCCGC AAGTGTATAA AATGAACATT
AACGGCGGTG CGGCGCAGCG TATTACCTGG GAAGGTTCGC AAAACCAGGA TGCGGATGTC
AGCAGCGACG GTAAATTTAT GGTAATGGTA AGCTCAAATA ACGGGCAGCA GCACATTGCC
AAACAAGATC TGGTGACGGG TGGCGTACAG GTTCTGTCGT CAACGTTCCT GGATGAAACG
CCAAGTCTGG CACCTAACGG CACGATGGTA ATCTACAGCT CTTCTCAGGG GATGGGATCT
GTGCTGAATT TGGTTTCTAC AGATGGGCGT TTCAAAGCGC GTCTTCCGGC AACTGATGGT
CAGGTGAAAT CGCCTGCCTG GTCGCCGTAT CTGTGA
|
|---|
| Protein sequence | MMKQALRVAF GFLMLWAAVL HAEVRIEITQ GVDSARPIGV VPFKWAGPGA APEDIGGIVA
ADLRNSGKFN PLDRSRLPQQ PATAQEVQPT AWSALGIDAV VVGQVTPNPD GSYNVAYQLV
DTGGAPGTVL AQNSYKVNKQ WLRYAGHTAS DEVFEKLTGI KGAFRTRIAY VVQTNGGQFP
YELRVSDYDG YNQFVVHRSP QPLMSPAWSP DGSKLAYVTF ESGRSALVIQ TLANGAVRQV
ASFPRHNGAP AFSPDGTKLA FALSKTGSLN LYVMDLASGQ IRQITDGRSN NTEPTWFPDS
QTLAFTSDQA GRPQVYKMNI NGGAAQRITW EGSQNQDADV SSDGKFMVMV SSNNGQQHIA
KQDLVTGGVQ VLSSTFLDET PSLAPNGTMV IYSSSQGMGS VLNLVSTDGR FKARLPATDG
QVKSPAWSPY L
|
|---|
| |