Gene SeD_A0823 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0823 
Symbol 
ID6873147 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp818856 
End bp819647 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content53% 
IMG OID642784018 
Productendonuclease VIII 
Protein accessionYP_002214697 
Protein GI198244062 
COG category[L] Replication, recombination and repair 
COG ID[COG0266] Formamidopyrimidine-DNA glycosylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.122241 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones73 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGAAG GCCCGGAAAT TCGTCGTGCG GCGGATAATC TGGAGGCGGC AATCAAAGGC 
AAACCCTTAA CCGATGTCTG GTTTGCCTTT GCACAGTTAA AACCGTATGA ATCGCAGCTT 
ACCGGTCAAC TTGTTACCCG GATAGAGACG CGGGGAAAAG CGTTATTGAC CCACTTTTCA 
AATGGCCTGA CGCTCTACAG CCACAACCAA CTCTATGGCG TATGGCGGGT GATCGATACT 
GGTGAAATAC CGCAGACCAC GCGTATATTG CGCGTCAGGC TACAAACGGC GGATAAAACT 
ATTCTGCTTT ATAGCGCGTC TGATATCGAA ATGCTGACAG CAGAGCAGCT CACGACGCAC 
CCTTTTTTAC AGCGGGTCGG TCCGGATGTG CTGGACGCGC GTCTCACTCC GGAAGAGGTT 
AAAGTTCGAT TGCTGTCGCC GCGTTTTCGC AACCGACAAT TTTCTGGGCT GTTGCTGGAT 
CAGGCCTTTC TGGCGGGATT GGGGAATTAT CTGCGCGTTG AAATCCTCTG GCAGGTAGGG 
TTAACCGGAC AGCATAAAGC GAAAGATCTC AACGAGGCGC AACTGAATGC GCTTTCTCAC 
GCGCTGTTGG ATATTCCGCG CCTGTCCTAC ACGACTCGCG GTCAGTCGGA TGAAAACAAG 
CATCATGGCG CACTGTTTCG CTTTAAGGTT TTCCATCGTG ACGGCGAAGC GTGCGAGCGG 
TGCGGCGGCA TTATTGAAAA GACAACACTG TCCTCACGCC CGTTTTACTG GTGCCCGCAT 
TGCCAGAAAT AG
 
Protein sequence
MPEGPEIRRA ADNLEAAIKG KPLTDVWFAF AQLKPYESQL TGQLVTRIET RGKALLTHFS 
NGLTLYSHNQ LYGVWRVIDT GEIPQTTRIL RVRLQTADKT ILLYSASDIE MLTAEQLTTH 
PFLQRVGPDV LDARLTPEEV KVRLLSPRFR NRQFSGLLLD QAFLAGLGNY LRVEILWQVG 
LTGQHKAKDL NEAQLNALSH ALLDIPRLSY TTRGQSDENK HHGALFRFKV FHRDGEACER 
CGGIIEKTTL SSRPFYWCPH CQK