Gene SeD_A0601 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0601 
Symbol 
ID6873268 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp616121 
End bp616717 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content42% 
IMG OID642783819 
Productfimbriae W protein 
Protein accessionYP_002214506 
Protein GI198245183 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.477015 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value0.0547035 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCGTA TCGCTATTAA GGAACAAAAC TGTCACTTTG AGCATGGTTT GAAAATCATC 
ATGACGCGTC TGGCGAATCA ATGGCAGCAG AAAATTGACT TTCTGCCGCC AGAAGAGATA 
GATAATGCCG ATATCGCTTT CCTGGCCCTG GATGATGATT GGTTCAGCGC AGGCTGTTAC 
CAGATACCTA TGCATACCCA ACATCAGCTA CGGGTGATTA TTTGTAATAA ATGCGATAAA 
GAAAAGCTCA TGTTCAGACT ATGTCTGTAT ATGCTGCCGC ATATTTATCG GAAAGATGAT 
GTTGAAGAAA TTACCCGGAA AATGATATTG ATCTTACATA AGCGAGCGCT TCGACATAGC 
GTCCCTTCTG GCATTTGCCA CTACTGCACG ACTCGTCATT TTTCAGTAAC AGAACGTCAC 
CTGTTAAAAC TGATCGCCAG CGGTTATCAT TTAAGCGAAA CGGGTGCTTT ACTTTCACTT 
TCTGAAGAGC AGACAAAGTC ACTCCGCCGG AGCATTATGC GCAAATTACA TGTTAAAACG 
GAGCAGCAGT TTTTAAAGTA TATTAGAGTT AACCTTCATT TCTTACTCAG TAAGTAA
 
Protein sequence
MLRIAIKEQN CHFEHGLKII MTRLANQWQQ KIDFLPPEEI DNADIAFLAL DDDWFSAGCY 
QIPMHTQHQL RVIICNKCDK EKLMFRLCLY MLPHIYRKDD VEEITRKMIL ILHKRALRHS 
VPSGICHYCT TRHFSVTERH LLKLIASGYH LSETGALLSL SEEQTKSLRR SIMRKLHVKT 
EQQFLKYIRV NLHFLLSK