| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0557 |
|---|
| Symbol | |
|---|
| ID | 6874337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 570555 |
|---|
| End bp | 572969 |
|---|
| Gene Length | 2415 bp |
|---|
| Protein Length | 804 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642783777 |
|---|
| Product | efflux ABC transporter permease |
|---|
| Protein accession | YP_002214464 |
|---|
| Protein GI | 198245013 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 73 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAGCTC GCTGGTTCTG GCGCGAATGG CGCTCGCCGT CGCTGATTAT TGTCTGGCTG
GCGTTGAGTC TGGCGGTGGC CTGCGTACTG GCGCTCGGCA GTATCAGCGA CCGGATGGAA
AAAGGGTTAA GTCAGCAAAG CCGCGAGTTT ATGGCAGGCG ATCGGACTCT GCAAAGTTCG
CGGGAGGTAC CGAAAGCCTG GCTTGAAGAG GCGCGTAAAC GCGGCCTTAA CGTGGGCGAG
CAGTTAACCT TTGCGACCAT GACGTTTGCC GGCGATACGC CGCAACTGGC CAGCGTGAAG
GCGGTAGATA GCGTTTATCC GATGTACGGC GAATTGCAAA CCCGTCCTGA CGGAGTGAAA
CCGCAGCCGG GTAGCGTACT GCTGGCGCCG CGTCTGATGG CGCTGCTTAA TTTGAAAACG
GGCGATACCA TTGATGTCGG CGACGTGACC TTGCGTATTG CCGGTGAAGT GGTGCAGGAG
CCGGATTCCG GGTTTAACCC TTTTCAGATG GCGCCGCGTC TGATGATGAA TATGGCCGAT
GTGGAAAAAA CCGGTGCGAT ACAGCCGGGG AGCCGCGTGA TGTGGCGGTA TAAATTCGGC
GGAACGCCGC AACAGCTTGC TGGCTATGAA AGCTGGCTGT TACCGCAGCT TAAACCGGAA
CATCGCTGGT ACGGACTGGA GGAGGATGAC GGGGCATTGG GGAAATCGCT CGAACGTTCG
CAGCAGTTTT TGCTGCTTTC GGCGTTATTA ACGCTACTGC TGGCGGTAGC TGCCGTCGCG
GTGGCGATGA GCCATTACTG CCGTAGCCGC TACGATCTGG TGGCGATTTT AAAAACGTTG
GGCGCGGGCC GGGCCCAGTT GCGTAAACTT ATTATCGGAC AGTGGTTGAT GGTGCTGGGG
CTTTCCGCCG TCACGGGAGG CGCGATTGGG TTACTGTTTG AAAACATATT GCTGGTGCTG
CTAAAACCGG TATTGCCCGC CGATTTGCCG CCCGCCAGCC TGTGGCCCTG GCTGTGGGCG
CTGGGCGCGA TGACGGTCAT CTCTCTGCTG GTCGGTTTAC GGCCTTATCG ATTGTTGCTG
GCGACCCAGC CGCTACGGGT GCTGCGCCGC GATGTTGTTG CTCGCGTCTG GCCGTTAAAA
ATTTATTTGC CTGTTGCCTG CGCCGTCGTG GTGGCGCTGC TCGCCGGATT GATGGGCGGA
AGTATGCTGT TGTGGGCGGT TCTGGCGGGC GCCGTGATAC TGGCGCTGCT GTGCGGTCTG
GTGGGCTGGA TGCTGCTTAA CGTGCTGCGC GGCATGACGT TGACGTCGCT ACCGCTGCGT
CTGGCCGTCA GCCGACTTCT GCGTCAGCCG TGGTCAACGT TGAGTCAGCT TTCGGCGTTT
TCGCTTTCGT TTATGCTGCT GGCGCTCTTG CTGGTGCTGC GCGGCGACCT CCTTGATCGC
TGGCAACAGC AGCTCCCGCC GGAAAGTCCG AACTATTTCC TTATCAATAT TGCTTCAGAA
CAGGTTGCGC CGCTGAAAGC CTTTTTGGCA GAACATCAGG TGATTCCGCA GACGTTTTAT
CCGATTGTGC GGGCGCGGTT AACCAGGATA AACGGTAATC CGACGGAAGG TCAGCAGGAT
GAGTCGCTCA ACCGTGAACT GAATTTGACC TGGCAGGATA CGCGCCCGGC GCATAATCCG
CTGGTCGCCG GTCACTGGCC GCCAAAACCG GGCGAAGTCT CTATGGAAGA GGGGCTGGCG
AAGCGGCTGA ACGTCAAACT CGGCGATAGC GTAACCTTTA TGGGCGATAC CCAGGCATTT
AGCGCTAAAG TCACCAGCCT GCGTCAAGTG GACTGGGAAA GCCTGCGGCC CAACTTTTTC
TTCATTTTTC CTTCCGGGGC GCTGGACGGG CAACCACAAA GCTGGTTGAC CAGTTTTCGC
TGGGAGAATG GCAACGGCAT GTTAACGCAG CTTAACCGCG AGTTTCCTAC CGTCAGCCTG
TTAGATATCG GGGCGATCCT GAAACAGGTG GGACAGGTGC TGGAGCAGGT CAGTCGGGCG
CTGGAGGTGA TGGTTGTGCT AGTCACCCTC TGCGGCATGT TGCTATTACT GGCTCAGGTA
CAGGTCGGGA TGCGTCAGCG CCATCAGGAG CTGGTGGTGT GGCGCACGTT AGGAGCCGGA
AAGAAACTGT TGCGTACCAC ACTCTGGTGC GAATTCGCCA TGCTGGGGTT AGTTGCCGGG
CTGGTCGCCG CGATTGGCGC GGAAACGGCG CTGGCGATCT TACAAATCAA CGTTTTTGAT
TTCCCCTGGG AGCCGGACTG GCGTTTATGG GGCGCACTGC CGTTTTGCGG CGCGCTGCTG
CTTTCCGTAT GCGGCGGCTG GCTTGGCGTT CGTTTGCTGA AAGGCAAAGC GCTATTCCGA
CAGTTTAGCG GATGA
|
|---|
| Protein sequence | MIARWFWREW RSPSLIIVWL ALSLAVACVL ALGSISDRME KGLSQQSREF MAGDRTLQSS
REVPKAWLEE ARKRGLNVGE QLTFATMTFA GDTPQLASVK AVDSVYPMYG ELQTRPDGVK
PQPGSVLLAP RLMALLNLKT GDTIDVGDVT LRIAGEVVQE PDSGFNPFQM APRLMMNMAD
VEKTGAIQPG SRVMWRYKFG GTPQQLAGYE SWLLPQLKPE HRWYGLEEDD GALGKSLERS
QQFLLLSALL TLLLAVAAVA VAMSHYCRSR YDLVAILKTL GAGRAQLRKL IIGQWLMVLG
LSAVTGGAIG LLFENILLVL LKPVLPADLP PASLWPWLWA LGAMTVISLL VGLRPYRLLL
ATQPLRVLRR DVVARVWPLK IYLPVACAVV VALLAGLMGG SMLLWAVLAG AVILALLCGL
VGWMLLNVLR GMTLTSLPLR LAVSRLLRQP WSTLSQLSAF SLSFMLLALL LVLRGDLLDR
WQQQLPPESP NYFLINIASE QVAPLKAFLA EHQVIPQTFY PIVRARLTRI NGNPTEGQQD
ESLNRELNLT WQDTRPAHNP LVAGHWPPKP GEVSMEEGLA KRLNVKLGDS VTFMGDTQAF
SAKVTSLRQV DWESLRPNFF FIFPSGALDG QPQSWLTSFR WENGNGMLTQ LNREFPTVSL
LDIGAILKQV GQVLEQVSRA LEVMVVLVTL CGMLLLLAQV QVGMRQRHQE LVVWRTLGAG
KKLLRTTLWC EFAMLGLVAG LVAAIGAETA LAILQINVFD FPWEPDWRLW GALPFCGALL
LSVCGGWLGV RLLKGKALFR QFSG
|
|---|
| |